{"id":"W2967149621","doi":"10.1186/s13148-019-0708-z","title":"DNA methylation signature is prognostic of choroid plexus tumor aggressiveness","year":2019,"lang":"en","type":"article","venue":"Clinical Epigenetics","topic":"Glioma Diagnosis and Treatment","field":"Medicine","cited_by":48,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University Health Centre; Princess Margaret Cancer Centre; Montreal Children's Hospital; SickKids Foundation; University of Toronto; Hospital for Sick Children","funders":"Canadian Institutes of Health Research; Brain Tumour Charity; Cancer Research UK; Ontario Genomics; Genome Canada","keywords":"dNaM; Choroid plexus papilloma; DNA methylation; Choroid plexus; Epigenetics; Medicine; Biology; Bioinformatics; Pathology; Oncology; Internal medicine; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002933815,0.0002422765,0.0002622118,0.000701857,0.0001843942,0.0003950256,0.0001555177,0.000280779,0.001495618],"category_scores_gemma":[0.001391772,0.0001539782,0.0001936414,0.0005795753,0.0002024573,0.0001520333,0.000239587,0.0003311034,0.0002695161],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003600947,"about_ca_system_score_gemma":0.000239413,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002634145,"about_ca_topic_score_gemma":0.003180554,"domain_scores_codex":[0.9998181,0.00002919659,0.00001665639,0.0000687909,0.00003943614,0.00002779467],"domain_scores_gemma":[0.9993963,0.0001481858,0.0002520329,0.00003815135,0.00007950058,0.00008585952],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0007866677,0.00002258847,0.8990548,0.00008973448,0.0002129712,0.0002286962,0.00009894686,0.000719632,0.08032969,0.00007268674,0.0004261075,0.01795753],"study_design_scores_gemma":[0.00001263756,0.0001216201,0.9818951,0.00001833081,0.0001362839,0.0009441076,0.00006594294,0.002292688,0.01320203,0.0002483362,0.001051378,0.00001159978],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.99534,0.001162653,0.0011526,0.0001017642,0.00001037705,0.00001403633,0.001350518,0.00004711473,0.0008209941],"genre_scores_gemma":[0.9982659,0.0002949935,0.0006294914,0.000025254,0.000007322532,0.00001078275,0.0005581566,0.000008185578,0.0001999207],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002634145,"threshold_uncertainty_score":0.005237699,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03530230870936922,"score_gpt":0.3567208028945009,"score_spread":0.3214184941851317,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}