{"id":"W2968362021","doi":"10.1093/nar/gkz668","title":"A 212-nt long RNA structure in the Tobacco necrosis virus-D RNA genome is resistant to Xrn degradation","year":2019,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Plant Virus Research Studies","field":"Agricultural and Biological Sciences","cited_by":24,"is_retracted":false,"has_abstract":true,"ca_institutions":"York University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Exoribonuclease; RNA; RNA-dependent RNA polymerase; Subgenomic mRNA; Virology; RNA editing; RNA silencing; Viral replication; RNA virus; Viroid; Non-coding RNA; Small nuclear RNA; RNase P; Virus; Genetics; Gene; RNA interference","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001542373,0.0002578972,0.0001823084,0.0001400684,0.0002262772,0.0003486669,0.0001100774,0.0002913134,0.0006159032],"category_scores_gemma":[0.0002696444,0.0001686737,0.0002962651,0.0001168919,0.0002261851,0.0001311358,0.0001393723,0.0003205338,0.0003239021],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002531009,"about_ca_system_score_gemma":0.0001506826,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004092802,"about_ca_topic_score_gemma":0.0005337735,"domain_scores_codex":[0.9998568,0.0000215016,0.00001263736,0.00005387622,0.00003720664,0.00001794717],"domain_scores_gemma":[0.9997815,0.00004749538,0.00008444517,0.00003041137,0.00002338426,0.00003274143],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002325842,0.000003358538,0.0004330318,0.00001219544,0.000002986069,0.00004171996,0.000008042711,0.00002459399,0.999044,0.00002888144,0.00000304053,0.0003749136],"study_design_scores_gemma":[0.000009502083,0.0004190751,0.03014283,0.000007687027,0.0000277175,0.001180782,0.00005130756,0.0007531139,0.965633,0.00009107618,0.001676864,0.000007119311],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9956726,0.0008482184,0.002707717,0.00002197103,0.000009331322,0.00001421205,0.000151217,0.00004502937,0.0005296334],"genre_scores_gemma":[0.9955895,0.0002121529,0.002458246,0.00002935483,0.000005202509,0.00001210133,0.0008342094,0.00001619687,0.0008431204],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0006159032,"threshold_uncertainty_score":0.002060354,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06144068489227173,"score_gpt":0.3167194447820293,"score_spread":0.2552787598897576,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}