{"id":"W2969870863","doi":"10.1016/j.virol.2019.08.019","title":"Phylogenetic analysis of West Nile virus in Quebec, Canada, 2004–2016: Co-circulation of distinct variants harbouring conserved amino acid motifs in North America","year":2019,"lang":"en","type":"article","venue":"Virology","topic":"Mosquito-borne diseases and control","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":false,"ca_institutions":"Institut National de Santé Publique du Québec","funders":"Centers for Disease Control and Prevention; Institut National de Santé Publique du Québec","keywords":"Biology; Phylogenetic tree; Monophyly; West Nile virus; Genotype; Phylogenetics; Flavivirus; Virology; Genetics; Genome; Virus; Clade; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004342479,0.0002824614,0.0002790662,0.002115597,0.001714464,0.001094655,0.0005804252,0.0004130821,0.001439835],"category_scores_gemma":[0.0007687452,0.0001429148,0.0003982417,0.003563159,0.0005625943,0.0002910721,0.0003871103,0.0005243419,0.0001844184],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.01333241,"about_ca_system_score_gemma":0.01209906,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.9823986,"about_ca_topic_score_gemma":0.9882268,"domain_scores_codex":[0.99954,0.00002904674,0.00002797631,0.0001007383,0.0001107516,0.0001916264],"domain_scores_gemma":[0.9985361,0.00007942004,0.0002497877,0.00003109952,0.0008135722,0.0002900447],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002565945,0.00002496606,0.9807748,0.00006470641,0.0001502318,0.0002384359,0.001379724,0.0003772425,0.005491305,0.000241767,0.001531034,0.009469209],"study_design_scores_gemma":[0.000002258264,0.00001260701,0.9968272,0.000019087,0.00002025812,0.00007762082,0.001014283,0.0002927458,0.0001291633,0.000009232916,0.001590241,0.00000535483],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9906633,0.001730295,0.0002334269,0.000249238,0.00002069769,0.00003663423,0.004238941,0.00001323393,0.002814275],"genre_scores_gemma":[0.9959769,0.0005316203,0.0002621165,0.0001331288,0.000007497001,0.00001116115,0.001835018,0.000006317385,0.001236278],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01760143,"threshold_uncertainty_score":0.09673387,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006292064605065722,"score_gpt":0.2243834336670338,"score_spread":0.2180913690619681,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}