{"id":"W2969947068","doi":"10.1186/s13567-019-0678-3","title":"Quantifying transmission of Mycobacterium avium subsp. paratuberculosis among group-housed dairy calves","year":2019,"lang":"en","type":"article","venue":"Veterinary Research","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":18,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada; Dairy Farmers of Manitoba; Dairy Farmers of Canada","keywords":"Paratuberculosis; Feces; Veterinary medicine; Biology; Transmission (telecommunications); Enteritis; Animal science; Mycobacterium; Inoculation; Microbiology; Immunology; Medicine; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001718124,0.0004870633,0.0005636933,0.0005555056,0.0003198205,0.0005138828,0.0006592394,0.0006937886,0.0004091141],"category_scores_gemma":[0.001891598,0.0001945479,0.000346808,0.0002240984,0.0002475126,0.0002971967,0.0003365985,0.0004342067,0.00008375138],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006463197,"about_ca_system_score_gemma":0.0003290545,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004695571,"about_ca_topic_score_gemma":0.007326991,"domain_scores_codex":[0.9985532,0.0004677591,0.00005952928,0.0004268169,0.0003220615,0.0001705498],"domain_scores_gemma":[0.9984862,0.00067231,0.0003709674,0.0001289923,0.000165577,0.0001759273],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00270866,0.002198342,0.638721,0.0002260977,0.0004880326,0.0001898511,0.0008485844,0.00319905,0.3360697,0.0001056539,0.00008824272,0.01515671],"study_design_scores_gemma":[0.00009728369,0.01710031,0.9308967,0.00003611625,0.0003945592,0.0002969208,0.0006987379,0.01217477,0.03784653,0.000115542,0.0003144906,0.00002803743],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9993975,0.00005348404,0.0004523128,0.000002192032,9.951051e-7,0.0000158914,0.00003856733,0.000002320136,0.00003678212],"genre_scores_gemma":[0.9985533,0.00005796044,0.00104206,0.00001182274,0.000002003435,0.00003325904,0.0001498801,0.000001803529,0.0001478774],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004695571,"threshold_uncertainty_score":0.009336472,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1351192907786075,"score_gpt":0.4000435564539837,"score_spread":0.2649242656753762,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}