{"id":"W2970153829","doi":"10.1093/gbe/evz184","title":"Current and Promising Approaches to Identify Horizontal Gene Transfer Events in Metagenomes","year":2019,"lang":"en","type":"review","venue":"Genome Biology and Evolution","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":81,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Metagenomics; Biology; Horizontal gene transfer; Computational biology; Genome; Gene; Context (archaeology); Contig; Gene duplication; Genetics; Shotgun sequencing","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.004291762,0.001685003,0.001741415,0.004200271,0.0007471623,0.003920855,0.002307445,0.00218305,0.002085541],"category_scores_gemma":[0.004251243,0.0008994996,0.001495249,0.003339041,0.001851431,0.005207345,0.002038938,0.003712995,0.001899056],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001399546,"about_ca_system_score_gemma":0.001572256,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001110094,"about_ca_topic_score_gemma":0.001831478,"domain_scores_codex":[0.997821,0.0006249025,0.000130511,0.0005950123,0.0007137271,0.0001148916],"domain_scores_gemma":[0.9975298,0.001117943,0.0003534051,0.0002905961,0.0005464033,0.0001618551],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0002636451,0.0001853115,0.006680821,0.01911978,0.0005305029,0.0005041474,0.0008962895,0.002983332,0.1854521,0.03862643,0.007919776,0.7368379],"study_design_scores_gemma":[0.0001065574,0.0006562163,0.01914784,0.007733357,0.0008023432,0.003318992,0.002065499,0.01841322,0.1572871,0.1681341,0.6218875,0.0004474159],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.01150849,0.6879966,0.2799606,0.008708267,0.001323586,0.0002410294,0.001122512,0.0009605091,0.008178513],"genre_scores_gemma":[0.06240987,0.5242914,0.4024334,0.003482641,0.000867894,0.0004908523,0.002078928,0.0002370562,0.003707864],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.004291762,"threshold_uncertainty_score":0.02269727,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1047116907146183,"score_gpt":0.3239519014606665,"score_spread":0.2192402107460482,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}