{"id":"W2970189291","doi":"10.1111/cmi.13107","title":"Here, there, and everywhere: How pathogenic<i>Escherichia coli</i>sense and respond to gastrointestinal biogeography","year":2019,"lang":"en","type":"review","venue":"Cellular Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":35,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; Michael Smith Health Research BC; University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Citrobacter rodentium; Biology; Colonisation; Microbiology; Enteropathogenic Escherichia coli; Effector; Secretion; Pathogen; Host (biology); Gastrointestinal tract; Type three secretion system; Citrobacter; Escherichia coli; Intestinal epithelium; Enterobacteriaceae; Virulence; Colonization; Epithelium; Immunology; Ecology; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0005335605,0.0008774632,0.00162279,0.0002521981,0.0001707289,0.00009898569,0.0003552498,0.0006354301,0.00001462228],"category_scores_gemma":[0.0002710347,0.0007411351,0.000421094,0.0003969159,0.0005588859,0.000005320287,0.001270236,0.0005655955,0.00005143117],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003316973,"about_ca_system_score_gemma":0.0002998082,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001886556,"about_ca_topic_score_gemma":0.00002786909,"domain_scores_codex":[0.9962015,0.0008276067,0.0004628838,0.001492714,0.00009438972,0.0009209564],"domain_scores_gemma":[0.9982143,0.0001505661,0.0002849052,0.0008722615,0.0001710042,0.0003069883],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001501177,0.00006905263,0.0004634877,0.004255199,0.0005373391,0.0001538438,0.0000206706,1.359595e-7,0.9659051,0.00002413574,0.003073517,0.02534744],"study_design_scores_gemma":[0.0004407725,0.001059577,0.00005963931,0.001164268,0.0003144634,0.0008843589,0.00006474024,6.069555e-7,0.001308147,0.000006054619,0.9939405,0.0007568999],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.07637296,0.9211714,0.00009484013,0.00009168418,0.0001683289,0.001428402,0.0004989728,0.00002561704,0.0001478148],"genre_scores_gemma":[0.0009590811,0.993486,0.002270435,0.0002669782,0.0002506981,0.0001515593,0.0006491559,0.000139828,0.001826259],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.990867,"threshold_uncertainty_score":0.999504,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02346868042488579,"score_gpt":0.2723382583671642,"score_spread":0.2488695779422784,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}