{"id":"W2970454867","doi":"10.1089/dna.2019.4869","title":"Identifying Hepatocellular Carcinoma Driver Genes by Integrative Pathway Crosstalk and Protein Interaction Network","year":2019,"lang":"en","type":"article","venue":"DNA and Cell Biology","topic":"Bioinformatics and Genomic Networks","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"ca_institutions":"Memorial University of Newfoundland","funders":"","keywords":"Crosstalk; Gene; Biology; Carcinogenesis; Hepatocellular carcinoma; Interaction network; Cancer research; Bioinformatics; Computational biology; Signal transduction; Pathogenesis; Disease; Genetics; Immunology; Medicine; Pathology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001168321,0.0001690043,0.0001690082,0.00001944424,0.00009239365,0.00004228766,0.00007874128,0.0002254158,0.00002830067],"category_scores_gemma":[0.00000287008,0.0001380705,0.00004379027,0.00003457612,0.0001030025,0.000007745879,0.0001463243,0.0001162314,0.00001200724],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00000739263,"about_ca_system_score_gemma":0.00001861288,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003410099,"about_ca_topic_score_gemma":0.00001304926,"domain_scores_codex":[0.9991868,0.00005197076,0.0001887978,0.0002982008,0.00002971204,0.0002445758],"domain_scores_gemma":[0.9996305,0.000009727925,0.0001040689,0.0001593236,0.00003149834,0.00006487036],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005481156,0.000014369,0.02352601,0.00003306875,0.00002429271,0.000001113278,0.0001662873,0.000003563136,0.9671578,0.0002259034,0.0005886311,0.008204166],"study_design_scores_gemma":[0.00134425,0.0009824659,0.001350426,0.00004336394,0.00002673032,0.00002845258,0.0009374193,0.003317369,0.7297699,0.001784044,0.2597858,0.0006297506],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9912927,0.004527151,0.001866004,0.00002253059,0.0002397576,0.0002913169,0.0000216321,0.000007007926,0.001731897],"genre_scores_gemma":[0.9969999,0.0003639549,0.0002487482,0.0001409566,0.0001464328,0.00001850798,0.0002726315,0.00001256136,0.001796308],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2591971,"threshold_uncertainty_score":0.5630351,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.005925694190308856,"score_gpt":0.2067909891780249,"score_spread":0.200865294987716,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}