{"id":"W2970842946","doi":"10.1371/journal.pone.0221397","title":"Distinction between Borrelia and Borreliella is more robustly supported by molecular and phenotypic characteristics than all other neighbouring prokaryotic genera: Response to Margos' et al. \"The genus Borrelia reloaded\" (PLoS ONE 13(12): e0208432)","year":2019,"lang":"en","type":"letter","venue":"PLoS ONE","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":68,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Network for Research and Innovation in Machining Technology, Natural Sciences and Engineering Research Council of Canada","keywords":"Borrelia; Biology; Genus; Zoology; Phylogenetic tree; Evolutionary biology; Borrelia burgdorferi; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.004636224,0.0003727542,0.0005174926,0.0006273569,0.0007533772,0.001616515,0.0006373595,0.001201974,0.001489903],"category_scores_gemma":[0.01451419,0.000205407,0.0004504083,0.0006185636,0.001051372,0.0008734583,0.001616608,0.002220268,0.0003484253],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000351096,"about_ca_system_score_gemma":0.0004171577,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009547681,"about_ca_topic_score_gemma":0.002106565,"domain_scores_codex":[0.9975463,0.0006985975,0.0001625449,0.0008174847,0.000504677,0.0002704171],"domain_scores_gemma":[0.9876248,0.00599565,0.002898194,0.0004948752,0.00199323,0.0009933976],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"not_applicable","study_design_scores_codex":[0.004511239,0.0002891774,0.6108819,0.00173499,0.0004635925,0.001861758,0.006046883,0.0006147427,0.2033088,0.001557772,0.01905808,0.149671],"study_design_scores_gemma":[0.0001126535,0.001128809,0.9143712,0.0003765313,0.0002928743,0.00200201,0.008607076,0.002724408,0.0338683,0.00382319,0.0325635,0.000129366],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"commentary","genre_scores_codex":[0.9616814,0.006410071,0.003111071,0.02348717,0.001164215,0.00004534315,0.0005088089,0.0001200023,0.003471859],"genre_scores_gemma":[0.9870596,0.001389777,0.002955095,0.006924884,0.0003837877,0.00003457577,0.0004547539,0.00004570892,0.0007517593],"genre_candidate":"commentary","genre_consensus":null,"teacher_disagreement_score":0.004636224,"threshold_uncertainty_score":0.02451903,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02327712966426376,"score_gpt":0.2204278614540309,"score_spread":0.1971507317897672,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}