{"id":"W2971207202","doi":"10.1186/s13100-019-0177-0","title":"Variable genome evolution in fungi after transposon-mediated amplification of a housekeeping gene","year":2019,"lang":"en","type":"article","venue":"Mobile DNA","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Agricultural Research Service; Joint Genome Institute; U.S. Department of Agriculture; U.S. Department of Energy","keywords":"Biology; Genome; Genetics; Transposable element; Gene; Mycosphaerella graminicola; Housekeeping gene; Genome evolution; Gene duplication","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001102558,0.000192773,0.0001396274,0.0003883537,0.0002075094,0.000334407,0.0001422933,0.000256943,0.0004615482],"category_scores_gemma":[0.0002334608,0.0001288034,0.0002853446,0.0004283703,0.0001841989,0.0001822216,0.0002327316,0.0003538693,0.000204908],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002836915,"about_ca_system_score_gemma":0.0001534172,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001303239,"about_ca_topic_score_gemma":0.001898962,"domain_scores_codex":[0.9998884,0.000007814227,0.000005696819,0.00004411165,0.00002670625,0.00002719745],"domain_scores_gemma":[0.9998263,0.00003472948,0.00005626226,0.00002301818,0.0000208365,0.00003888519],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001636981,0.00001086242,0.005968719,0.00002523121,0.00001305316,0.0001714121,0.00004914873,0.0001149095,0.9883068,0.0001301131,0.00001996627,0.005026126],"study_design_scores_gemma":[0.00003138573,0.000458425,0.6827391,0.00002546984,0.0001220885,0.00318112,0.0002095988,0.003111382,0.3007765,0.0004975331,0.008812927,0.00003456246],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.996892,0.0005699956,0.00130817,0.00001726269,0.000004305991,0.000007588464,0.000306414,0.00003963214,0.0008546757],"genre_scores_gemma":[0.9953097,0.0003571332,0.001943757,0.0000482762,0.000005650024,0.00001085916,0.001169474,0.00002417096,0.001131011],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001303239,"threshold_uncertainty_score":0.002591312,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006101150425819374,"score_gpt":0.1772524811102534,"score_spread":0.1711513306844341,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}