{"id":"W2971277259","doi":"10.1186/s40168-019-0730-6","title":"Exploring the effects of operational mode and microbial interactions on bacterial community assembly in a one-stage partial-nitritation anammox reactor using integrated multi-omics","year":2019,"lang":"en","type":"article","venue":"Microbiome","topic":"Wastewater Treatment and Nitrogen Removal","field":"Environmental Science","cited_by":107,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Ottawa","funders":"Natural Sciences and Engineering Research Council of Canada; University of Hong Kong; University Grants Committee","keywords":"Anammox; Biology; Metagenomics; Autotroph; Microbial ecology; Microbial population biology; Bacteria; Chloroflexi (class); Metaproteomics; Heterotroph; Temperature gradient gel electrophoresis; Candidatus; Abiotic component; Microorganism; Microbiology; 16S ribosomal RNA; Ecology; Proteobacteria; Denitrification; Biochemistry; Chemistry; Denitrifying bacteria; Genetics; Gene; Nitrogen","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004638545,0.0005752128,0.000655513,0.000248845,0.0002195934,0.0006557216,0.0003835047,0.0004608235,0.0003185898],"category_scores_gemma":[0.0003453217,0.0002381631,0.00069597,0.0002351192,0.0002059149,0.0004986685,0.000461616,0.0005152838,0.0001452454],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003107509,"about_ca_system_score_gemma":0.0003490384,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001260845,"about_ca_topic_score_gemma":0.001658328,"domain_scores_codex":[0.9996626,0.00003928662,0.00002400229,0.0001225794,0.00009546937,0.00005612804],"domain_scores_gemma":[0.9998006,0.00005866167,0.00004763719,0.00001640902,0.00004215328,0.00003441183],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001190039,0.00007558543,0.002910184,0.00006661153,0.00001736776,0.00002539741,0.00002448462,0.000573726,0.9937944,0.00001328449,0.000009482042,0.002370322],"study_design_scores_gemma":[0.00001863295,0.0009890101,0.04822785,0.00001253425,0.0001020309,0.00009562896,0.0001598972,0.03349862,0.9162809,0.00007688379,0.0004996408,0.00003832766],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9968202,0.0001868822,0.002580135,0.00002072593,0.00000614043,0.0000199383,0.0002039862,0.0000317295,0.0001302367],"genre_scores_gemma":[0.9876055,0.0003400776,0.01110636,0.00002796561,0.00000595413,0.00006073201,0.0005210991,0.00001446857,0.0003178345],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001260845,"threshold_uncertainty_score":0.002506971,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06469289932036087,"score_gpt":0.266242199860153,"score_spread":0.2015493005397921,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}