{"id":"W2971310570","doi":"10.1002/ijc.32655","title":"<i>BRCA1</i> promoter methylation in peripheral blood is associated with the risk of triple‐negative breast cancer","year":2019,"lang":"en","type":"article","venue":"International Journal of Cancer","topic":"BRCA gene mutations in cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":63,"is_retracted":false,"has_abstract":true,"ca_institutions":"Women's College Hospital","funders":"Narodowe Centrum Nauki","keywords":"Methylation; Breast cancer; DNA methylation; Cancer; Concordance; Oncology; Medicine; Odds ratio; Internal medicine; Triple-negative breast cancer; Estrogen receptor; Cancer research; Biology; Gene; Gene expression; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002949343,0.0001075874,0.0001607538,0.00007491056,0.00001919784,0.00002077944,0.000304039,0.00007491655,0.0003084666],"category_scores_gemma":[0.00004629455,0.00007113718,0.00009907914,0.0001340531,0.00007055097,0.00002046368,0.00003571989,0.0001820023,7.218752e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001999294,"about_ca_system_score_gemma":0.0004761406,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002928166,"about_ca_topic_score_gemma":0.001215661,"domain_scores_codex":[0.9989238,0.00009877763,0.0003147748,0.0001417136,0.0004122296,0.0001086608],"domain_scores_gemma":[0.9981734,0.00003107464,0.000685229,0.0001109968,0.0009741753,0.00002514902],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.002542887,0.0003525477,0.7501668,0.00001652915,0.006390107,0.00001049079,0.002803245,0.03254058,0.176391,0.00003956552,0.003978223,0.02476806],"study_design_scores_gemma":[0.007731952,0.0004098908,0.6662915,0.0003549271,0.0003358506,0.00007273581,0.0003743365,0.0005038094,0.3202438,0.0002433311,0.003157866,0.0002800538],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.99446,0.001718452,0.0001374467,0.002473768,0.000607737,0.0001538871,0.0002766013,0.000001443641,0.0001705978],"genre_scores_gemma":[0.9979053,0.0008069769,0.0001342568,0.00042401,0.0003154145,0.00002286137,0.000007432723,0.00001621243,0.0003675828],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1438528,"threshold_uncertainty_score":0.3377492,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0059973562133345,"score_gpt":0.2771215313343826,"score_spread":0.2711241751210481,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}