{"id":"W2971355940","doi":"10.1101/749879","title":"Cloning of Two Gene Clusters Involved in the Catabolism of 2,4-Dinitrophenol by <i>Paraburkholderia</i> sp. Strain KU-46 and Characterization of the Initial DnpAB Enzymes and a Two-Component Monooxygenase DnpC1C2","year":2019,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Pharmaceutical and Antibiotic Environmental Impacts","field":"Environmental Science","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University","funders":"Kansai University","keywords":"Operon; Gene cluster; Gene; Biochemistry; Escherichia coli; Mutant; Biology; Enzyme; Chemistry; Intein; Molecular biology; RNA","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001211018,0.0007465741,0.0004283646,0.0006202931,0.0002017992,0.0004118923,0.0003295109,0.0003717536,0.0007759882],"category_scores_gemma":[0.000312516,0.0002744005,0.0004261226,0.0004674485,0.0002311071,0.0002667694,0.0005262984,0.0007373671,0.0006904649],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004753229,"about_ca_system_score_gemma":0.0004429255,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002736357,"about_ca_topic_score_gemma":0.001569365,"domain_scores_codex":[0.9997764,0.0000253241,0.00001585673,0.00006745086,0.00005206585,0.0000628882],"domain_scores_gemma":[0.9996561,0.00007258177,0.00009021325,0.00003858069,0.00005737497,0.00008524276],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001164141,0.00004921945,0.0009292694,0.00005162406,0.000004927898,0.00009418477,0.00006076034,0.00007004199,0.9961738,0.00008165017,0.00003271373,0.002335531],"study_design_scores_gemma":[0.00005685261,0.0003914011,0.07958375,0.00004662078,0.00007493974,0.001473703,0.0004899421,0.003178394,0.9079497,0.0002464687,0.006473614,0.0000347264],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9895773,0.0008286236,0.006484052,0.0001730606,0.00003104177,0.0001053373,0.001678172,0.0001202183,0.001002269],"genre_scores_gemma":[0.9692536,0.0006480633,0.01404856,0.0001085131,0.00001858409,0.0001638276,0.01068605,0.00007919376,0.004993616],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002736357,"threshold_uncertainty_score":0.005440831,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01748160261726587,"score_gpt":0.2391254531736443,"score_spread":0.2216438505563784,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}