{"id":"W2971458712","doi":"10.1139/gen-2019-0100","title":"Molecular epidemiology of carbapenem-resistance plasmids using publicly available sequences","year":2019,"lang":"en","type":"article","venue":"Genome","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health","keywords":"Plasmid; Biology; Replicon; Carbapenem; Genetics; Molecular epidemiology; Microbiology; Gene; Genotype; Antibiotics","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008647948,0.0003283785,0.00045545,0.002787228,0.0003615351,0.00111509,0.0003360424,0.0004361938,0.002166955],"category_scores_gemma":[0.003367334,0.0001561542,0.0004068492,0.003925606,0.0001983434,0.0006118544,0.000769803,0.0005157394,0.001023142],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002982208,"about_ca_system_score_gemma":0.0008009311,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001660281,"about_ca_topic_score_gemma":0.003008696,"domain_scores_codex":[0.9986643,0.0002667161,0.0001890416,0.0003414799,0.0003611281,0.000177402],"domain_scores_gemma":[0.9983096,0.0004931764,0.0006699102,0.0001913506,0.00025545,0.00008062104],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001507054,0.0006268931,0.6016244,0.002814885,0.0004000558,0.00107268,0.001560984,0.00170183,0.2288429,0.001703274,0.00416617,0.1539789],"study_design_scores_gemma":[0.00003171346,0.000545162,0.8982213,0.000712977,0.0002811159,0.002014281,0.00123688,0.004252845,0.0614715,0.0009718789,0.03019741,0.00006293203],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9298712,0.002909222,0.009833138,0.0003568624,0.00003383312,0.0001503678,0.05342469,0.0003862447,0.003034479],"genre_scores_gemma":[0.8501704,0.002605583,0.02484803,0.0001096246,0.00004253164,0.0001432747,0.1206745,0.00006688992,0.001339123],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002787228,"threshold_uncertainty_score":0.007249177,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02247851846162221,"score_gpt":0.2649194901730432,"score_spread":0.242440971711421,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}