{"id":"W2971541299","doi":"10.1128/mra.00074-19","title":"Whole-Genome Sequence of Listeria monocytogenes Serovar 1/2a Strain IZSAM_Lm_15_17439_A144, Representative of a Human Outbreak in 2008","year":2019,"lang":"en","type":"article","venue":"Microbiology Resource Announcements","topic":"Listeria monocytogenes in Food Safety","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Ministero della Salute","keywords":"Listeria monocytogenes; Outbreak; Strain (injury); Serotype; Whole genome sequencing; Biology; Microbiology; Virology; Sequence (biology); Genome; Genetics; Bacteria; Gene","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001998739,0.000675574,0.0005634959,0.001431449,0.0005081907,0.0005139286,0.0004227142,0.000767261,0.002434527],"category_scores_gemma":[0.0007643499,0.0002715098,0.0007760774,0.001954933,0.0002129661,0.0002925397,0.0005569301,0.001067676,0.00237306],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003701884,"about_ca_system_score_gemma":0.001315705,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.008838887,"about_ca_topic_score_gemma":0.009630919,"domain_scores_codex":[0.9998136,0.00001797701,0.00001938301,0.00006024746,0.000056572,0.00003211908],"domain_scores_gemma":[0.9995291,0.00008196942,0.0001530352,0.00004835674,0.0001203913,0.00006724229],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.002421198,0.0002527673,0.03232143,0.001542757,0.0001670679,0.001873168,0.0007533326,0.001042723,0.9122345,0.0002659032,0.01463875,0.03248631],"study_design_scores_gemma":[0.0002678571,0.001393153,0.7713815,0.0004534395,0.0007465847,0.006388484,0.001231309,0.001958346,0.0648393,0.0005378804,0.1506306,0.0001716095],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.6193631,0.005698552,0.005398853,0.001023743,0.0004768,0.0002557784,0.3601584,0.0005950209,0.007029894],"genre_scores_gemma":[0.2941221,0.002977926,0.02240409,0.0005267446,0.0001511339,0.0002099167,0.6746996,0.0003138309,0.004594699],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.008838887,"threshold_uncertainty_score":0.01757491,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06535141449092653,"score_gpt":0.3341587310511694,"score_spread":0.2688073165602429,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}