{"id":"W2972040044","doi":"10.1139/bcb-2019-0096","title":"Genes responsive to rapamycin and serum deprivation are clustered on chromosomes and undergo reorganization within local chromatin environments","year":2019,"lang":"en","type":"article","venue":"Biochemistry and Cell Biology","topic":"Genomics and Chromatin Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto; York University; University of Saskatchewan","funders":"Division of Chemistry; Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; College of Agriculture and Bioresources, University of Saskatchewan; University of Saskatchewan","keywords":"Biology; Chromatin; Chromosome conformation capture; Gene; Chromosome; Genetics; Genome; Gene expression; Regulation of gene expression; Enhancer","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":true,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00003921755,0.0001354167,0.000195836,0.0002315714,0.0001338865,0.000191944,0.0001056769,0.0001067831,0.0005421449],"category_scores_gemma":[0.0001368019,0.0001055728,0.0001871794,0.000267016,0.0002157272,0.00007492678,0.0001005524,0.0001056965,0.000114333],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002644649,"about_ca_system_score_gemma":0.0001904843,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002828826,"about_ca_topic_score_gemma":0.006029025,"domain_scores_codex":[0.9999566,0.000004406955,0.000001696313,0.00001658049,0.00001188816,0.000008840862],"domain_scores_gemma":[0.9999398,0.00001555438,0.00002468864,0.00000611584,0.000006214936,0.00000768063],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001290499,0.000008102449,0.006843374,0.00004622931,0.000019267,0.00007215762,0.00003286118,0.00351197,0.9855278,0.0002280742,0.00004389958,0.003537345],"study_design_scores_gemma":[0.00002288715,0.0002260209,0.4044308,0.000009454341,0.00006010941,0.0004711317,0.0001533932,0.03353336,0.5573328,0.0005423484,0.003187334,0.00003036853],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9965606,0.000163603,0.002615952,0.00001101506,0.000001632363,0.000005612791,0.0001488852,0.00005916414,0.0004334485],"genre_scores_gemma":[0.9964766,0.0001429018,0.002633678,0.000008925684,0.000001318688,0.00001320413,0.0003591385,0.000009165043,0.0003551325],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002828826,"threshold_uncertainty_score":0.005624771,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.003632238993983331,"score_gpt":0.1881019647426454,"score_spread":0.1844697257486621,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}