{"id":"W2972599183","doi":"10.1101/771220","title":"Patterns of smallpox mortality in London, England, over three centuries","year":2019,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Yersinia bacterium, plague, ectoparasites research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University; Canadian Institute for Health Information; Canadian Institute for Advanced Research","funders":"Natural Sciences and Engineering Research Council of Canada; McMaster University; James S. McDonnell Foundation","keywords":"Smallpox; Infectious disease (medical specialty); History; Variola virus; Smallpox virus; Demography; Geography; Genealogy; Medicine; Virology; Disease; Biology; Vaccination; Sociology; Pathology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002382065,0.0001564387,0.000173426,0.001754648,0.0002163383,0.0006770662,0.0002745588,0.0002293671,0.002327278],"category_scores_gemma":[0.001410821,0.000130959,0.0001193023,0.001997186,0.0003825923,0.0005001096,0.0007098371,0.0001356056,0.0004054319],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001240244,"about_ca_system_score_gemma":0.0003709203,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.1179194,"about_ca_topic_score_gemma":0.1940802,"domain_scores_codex":[0.999822,0.00002458703,0.00003140428,0.00005589632,0.00003570452,0.00003051716],"domain_scores_gemma":[0.9982741,0.0002240423,0.0009759151,0.00008427975,0.0003154653,0.0001262175],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002424332,0.00001262693,0.9732736,0.0002098909,0.00007930182,0.0007150961,0.006839877,0.0007038629,0.002546669,0.0005110072,0.0030423,0.01182334],"study_design_scores_gemma":[0.000002757096,0.000009822469,0.9961689,0.0000242238,0.000005842437,0.00007476949,0.0009572549,0.0001607936,0.00009528634,0.00002383872,0.002470926,0.000005600833],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9921591,0.0007573526,0.0001439814,0.0002461009,0.000009429038,0.000009184151,0.005100188,0.00001236472,0.001562303],"genre_scores_gemma":[0.9947907,0.0004763901,0.00009601758,0.00003039984,0.00001274745,0.00001719728,0.002292919,0.000008306837,0.002275398],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1179194,"threshold_uncertainty_score":0.2344661,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01496119784924909,"score_gpt":0.2517067320729293,"score_spread":0.2367455342236802,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}