{"id":"W2972722913","doi":"10.1128/iai.00532-19","title":"Resolution and Cooccurrence Patterns of Gardnerella leopoldii, G. swidsinskii, G. piotii, and G. vaginalis within the Vaginal Microbiome","year":2019,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":90,"is_retracted":false,"has_abstract":true,"ca_institutions":"B.C. Women's Hospital & Health Centre; Women's Health Research Institute; University of Saskatchewan","funders":"Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Gardnerella vaginalis; Dysbiosis; Biology; Microbiome; Bacterial vaginosis; Microbiology; Virulence; Vaginitis; Immunology; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003770823,0.0002198175,0.0002653879,0.001289318,0.0004151663,0.0008317616,0.000221035,0.0006175452,0.001868647],"category_scores_gemma":[0.001844194,0.0001659467,0.0002709179,0.001104568,0.0004052857,0.0006006875,0.001020027,0.0005852325,0.000474],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002039533,"about_ca_system_score_gemma":0.0002335296,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003131287,"about_ca_topic_score_gemma":0.003387582,"domain_scores_codex":[0.999313,0.0001252155,0.00005700095,0.0002085247,0.0001159805,0.0001803079],"domain_scores_gemma":[0.9990977,0.0001836444,0.0003616851,0.00006512781,0.0001516391,0.0001402134],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0006315709,0.00005962621,0.9417953,0.000141725,0.0001356283,0.0004231719,0.001261305,0.00009503048,0.02960075,0.0001994587,0.0005740877,0.02508247],"study_design_scores_gemma":[0.000006651283,0.0001257692,0.9919127,0.00005222866,0.00004851723,0.00133142,0.002256076,0.0002532247,0.001612871,0.0002482946,0.002137932,0.00001421125],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9953265,0.002092947,0.0003529367,0.0001285948,0.00001951502,0.00001719339,0.0007567513,0.00001011133,0.001295564],"genre_scores_gemma":[0.9979258,0.0005613241,0.0004696996,0.00005387051,0.00001545511,0.00001028351,0.0005503051,0.000006311963,0.0004069224],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003131287,"threshold_uncertainty_score":0.006251216,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01602454114292863,"score_gpt":0.2731370673850292,"score_spread":0.2571125262421006,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}