{"id":"W2972722913","doi":"10.1128/iai.00532-19","title":"Resolution and Cooccurrence Patterns of Gardnerella leopoldii, G. swidsinskii, G. piotii, and G. vaginalis within the Vaginal Microbiome","year":2019,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":90,"is_retracted":false,"has_abstract":true,"ca_institutions":"B.C. Women's Hospital & Health Centre; Women's Health Research Institute; University of Saskatchewan","funders":"Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Gardnerella vaginalis; Dysbiosis; Biology; Microbiome; Bacterial vaginosis; Microbiology; Virulence; Vaginitis; Immunology; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000837545,0.0001582752,0.0002187346,0.000192571,0.0003784736,0.00004502123,0.00008610779,0.0001454965,0.0001860751],"category_scores_gemma":[0.0001275195,0.0001199555,0.00003464215,0.0002044889,0.0006151299,0.0001986358,0.0001633464,0.0005999286,0.00003715982],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002991838,"about_ca_system_score_gemma":0.00004490652,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004984844,"about_ca_topic_score_gemma":0.0001594958,"domain_scores_codex":[0.9987156,0.0004947418,0.0002495454,0.0002894549,0.00004534102,0.0002053179],"domain_scores_gemma":[0.9990808,0.0001952629,0.0001452079,0.0003803179,0.0001733109,0.00002509146],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001437111,0.000159091,0.5261148,0.0001073621,0.0001226809,3.827575e-7,0.0009526138,0.00000806756,0.4668901,0.0008727523,0.0001918321,0.004436621],"study_design_scores_gemma":[0.001110682,0.0004863936,0.9213486,0.00008459602,0.00004486402,0.0005110221,0.0005031644,0.0000249077,0.06564999,0.0002042162,0.009836754,0.0001947972],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9960925,0.001879653,0.000146067,0.0002077599,0.0005422657,0.0003514349,0.00003102053,0.0000344658,0.0007148503],"genre_scores_gemma":[0.9982589,0.001025427,0.00001280146,0.00003207266,0.00001656047,0.00001019617,0.00002699196,0.000008936221,0.0006080911],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4012401,"threshold_uncertainty_score":0.7535626,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01602454114292863,"score_gpt":0.2731370673850292,"score_spread":0.2571125262421006,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}