{"id":"W2972812798","doi":"10.1126/sciadv.aax5068","title":"Structure of human Vitronectin C-terminal domain and interaction with <i>Yersinia pestis</i> outer membrane protein Ail","year":2019,"lang":"en","type":"article","venue":"Science Advances","topic":"Yersinia bacterium, plague, ectoparasites research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":30,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Institute of General Medical Sciences; National Cancer Institute; National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research","keywords":"Vitronectin; Yersinia pestis; Bacterial outer membrane; Cell biology; Biology; Domain (mathematical analysis); Computational biology; Virulence; Genetics; Gene; Fibronectin","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001643135,0.000119358,0.0001356701,0.00008845291,0.0001125216,0.00004721566,0.0002385456,0.00004679721,0.00003752182],"category_scores_gemma":[0.00002644283,0.00009354937,0.00001901889,0.0002033874,0.0005548065,0.00006724426,0.00009674894,0.0001097067,0.00000364542],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001862358,"about_ca_system_score_gemma":0.00009281569,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001709663,"about_ca_topic_score_gemma":0.00009682748,"domain_scores_codex":[0.9988592,0.00003345919,0.000127802,0.0004306851,0.0002851953,0.0002636913],"domain_scores_gemma":[0.9994554,0.000009730157,0.0001022179,0.0002517949,0.0001065846,0.00007428729],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001769917,0.00001641902,0.01447295,0.00004884044,0.000004989738,0.000003036847,0.0000874872,0.00001960573,0.984141,0.00001230302,0.000003473284,0.001012909],"study_design_scores_gemma":[0.0003961648,0.0008709451,0.009651418,0.00004839285,0.000003469841,0.00008530189,0.0002368302,0.000008373382,0.9875794,0.00004266397,0.0009485105,0.0001285093],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9990441,0.000101892,0.00004544039,0.00005752291,0.00007380551,0.0002799296,0.00001241015,0.000005620573,0.0003792946],"genre_scores_gemma":[0.997459,0.000005179632,0.002181798,0.00002690923,0.00004242497,0.000004868634,0.00001405707,0.000008449565,0.0002573212],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004821528,"threshold_uncertainty_score":0.3814833,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.004931258500753666,"score_gpt":0.2805896243817908,"score_spread":0.2756583658810371,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}