{"id":"W2973489729","doi":"10.1093/gbe/evz197","title":"A High-Resolution View of Adaptive Event Dynamics in a Plasmid","year":2019,"lang":"en","type":"article","venue":"Genome Biology and Evolution","topic":"Evolution and Genetic Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval","funders":"National Institute of Allergy and Infectious Diseases; National Institute of General Medical Sciences; National Human Genome Research Institute; Pennsylvania State University; Alfred P. Sloan Foundation; National Institutes of Health; National Science Foundation","keywords":"Plasmid; Biology; Genetics; Escherichia coli; Population; Experimental evolution; Gene; Chromosome; Genome","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002051952,0.0001377573,0.0002510747,0.0004094211,0.0003509471,0.0007392925,0.0004620622,0.0004512446,0.002477606],"category_scores_gemma":[0.0006105728,0.0002602465,0.0002759829,0.0003006857,0.0004755355,0.0009964482,0.000367468,0.001211962,0.0004079784],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005605224,"about_ca_system_score_gemma":0.0003228133,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001383894,"about_ca_topic_score_gemma":0.001274542,"domain_scores_codex":[0.9999524,0.000006430746,0.000001994156,0.00001440403,0.00001544746,0.000009190812],"domain_scores_gemma":[0.9997491,0.0001088403,0.00002795888,0.00004474865,0.00002081015,0.00004842319],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003978832,0.000240674,0.01763487,0.0002751513,0.0001669113,0.001354657,0.000707742,0.3580771,0.5325229,0.05276667,0.002389807,0.03346555],"study_design_scores_gemma":[0.00002262482,0.0001072502,0.02261412,0.00001639336,0.00002947949,0.0004211926,0.000128831,0.9375877,0.02003018,0.01521421,0.003784549,0.00004350302],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7859625,0.000826591,0.2012064,0.001061598,0.00005048185,0.00003141947,0.0006474541,0.001287735,0.008925868],"genre_scores_gemma":[0.9731532,0.0003782549,0.02492125,0.00005229489,0.00001800252,0.00002383632,0.0002070399,0.00006879595,0.001177312],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002477606,"threshold_uncertainty_score":0.008288443,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.004354302216958667,"score_gpt":0.221718685813012,"score_spread":0.2173643835960533,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}