{"id":"W2973777064","doi":"10.1101/768473","title":"Discovery and characterization of a Gram-positive Pel polysaccharide biosynthetic gene cluster","year":2019,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph; Hospital for Sick Children; University of Toronto","funders":"Canadian Institutes of Health Research; Hospital for Sick Children; Natural Sciences and Engineering Research Council of Canada; Sick Kids Foundation; Cystic Fibrosis Canada","keywords":"Operon; Biofilm; Biology; Gene cluster; Pentamer; Cereus; Microbiology; Gene; Bacillus cereus; Pseudomonas aeruginosa; Bacteria; Biochemistry; Genetics; Escherichia coli","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002354335,0.0003633712,0.0004543451,0.001187045,0.0003198076,0.0006742406,0.0003437962,0.0004339468,0.001052264],"category_scores_gemma":[0.0007630902,0.0001534457,0.0003935619,0.001332034,0.000189048,0.0002304685,0.0004842327,0.0004689367,0.0008463157],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002805342,"about_ca_system_score_gemma":0.0006663272,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002065312,"about_ca_topic_score_gemma":0.001887077,"domain_scores_codex":[0.9997762,0.00001739625,0.00001533254,0.00007222078,0.0000856757,0.0000330895],"domain_scores_gemma":[0.9996526,0.00006601089,0.00006761464,0.00003282306,0.00008882279,0.00009218684],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001379561,0.00005550246,0.005168941,0.0001601893,0.00001336218,0.0002255333,0.0001355255,0.0004150029,0.9801652,0.0002238395,0.000175842,0.01312307],"study_design_scores_gemma":[0.0001017743,0.000747101,0.2257762,0.0001672802,0.000173865,0.003138555,0.0008838774,0.03975437,0.69481,0.00142743,0.03292539,0.0000942942],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9643967,0.001350737,0.02034328,0.000248693,0.00002810076,0.0002365472,0.0106688,0.0003531413,0.002374031],"genre_scores_gemma":[0.90968,0.0009832201,0.06353515,0.0001568912,0.00002347368,0.0001608129,0.02308787,0.0001442049,0.002228391],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002065312,"threshold_uncertainty_score":0.004106581,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.005920145779864443,"score_gpt":0.1937267455604582,"score_spread":0.1878065997805938,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}