{"id":"W2974984530","doi":"10.1073/pnas.1907517116","title":"A distinct lineage of giant viruses brings a rhodopsin photosystem to unicellular marine predators","year":2019,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Photoreceptor and optogenetics research","field":"Neuroscience","cited_by":180,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Japan Society for the Promotion of Science; GEOMAR Helmholtz-Zentrum für Ozeanforschung Kiel; Joint Genome Institute; Sight Research UK; Canon Foundation in Europe; Natural Environment Research Council; Gordon and Betty Moore Foundation; U.S. Department of Energy","keywords":"Biology; Giant Virus; Horizontal gene transfer; Lineage (genetic); Genome; Rhodopsin; Evolutionary biology; Gene; Genetics; Botany; Retinal","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001431469,0.0001147809,0.0002264491,0.0002704436,0.0001039638,0.00003405794,0.001623874,0.00006290291,0.00008462325],"category_scores_gemma":[0.001686127,0.00007838151,0.00009211971,0.00147926,0.0005752131,0.0002551315,0.0006515629,0.0001612815,0.00001106239],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004036968,"about_ca_system_score_gemma":0.00006156767,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000342924,"about_ca_topic_score_gemma":2.566154e-7,"domain_scores_codex":[0.9969787,0.00001874144,0.0004355909,0.0003853699,0.001948403,0.000233188],"domain_scores_gemma":[0.9989669,0.0002833598,0.0003888199,0.00002247445,0.0002595838,0.00007881522],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004164015,0.00005165482,0.01486336,0.0001391361,0.000003951449,9.980721e-9,0.00016155,0.00003899722,0.9801577,0.004370624,0.00007112929,0.0001002914],"study_design_scores_gemma":[0.0001549265,0.00009540735,0.02985126,0.0001210778,0.00000429304,0.00000446813,0.00006569266,0.001864043,0.9664329,0.0008931992,0.0004297011,0.00008302047],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9907873,0.0000179448,8.528429e-7,0.0002327117,0.00003382113,0.0004848919,0.00005141093,0.00001040389,0.008380637],"genre_scores_gemma":[0.998829,0.00001232443,0.0005492722,0.0001534476,0.00003057797,0.00001155225,6.397844e-8,0.000007165319,0.0004065746],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0149879,"threshold_uncertainty_score":0.3196305,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.07779348969629077,"score_gpt":0.339760058303632,"score_spread":0.2619665686073412,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}