{"id":"W2975210235","doi":"10.1373/clinchem.2019.310714","title":"Whither Extensive Genomic-Based Microbial Taxonomic Revision?","year":2019,"lang":"en","type":"letter","venue":"Clinical Chemistry","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":7,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"","keywords":"Computational biology; Biology; Evolutionary biology","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["research_integrity","insufficient_payload"],"category_scores_codex":[0.0009220359,0.0005653179,0.001180354,0.00008416041,0.0001510961,0.00005287787,0.000920449,0.004101082,0.007065629],"category_scores_gemma":[0.001855441,0.0005263424,0.0008578863,0.0001260515,0.001016083,0.0000496136,0.0003009804,0.00824833,0.0201981],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002509304,"about_ca_system_score_gemma":0.0008134414,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001440907,"about_ca_topic_score_gemma":3.119156e-7,"domain_scores_codex":[0.9956732,0.000559675,0.001180421,0.001710632,0.00008153607,0.0007945815],"domain_scores_gemma":[0.9947163,0.002003308,0.0005713586,0.002232255,0.0004381367,0.00003862078],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00013859,0.0001610928,0.001560526,0.0002507853,0.0003672795,0.0000620535,0.00000261791,0.000003899676,0.09472535,2.356826e-7,0.9017376,0.0009900309],"study_design_scores_gemma":[0.00131672,0.00009999642,0.0004566927,0.0001338913,0.0001148197,0.000101966,0.000005528328,0.00000110853,0.04101652,0.000009808883,0.9562094,0.0005335367],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"commentary","genre_gemma":"commentary","genre_scores_codex":[0.350268,0.005741437,0.0001070099,0.6051134,0.01263207,0.002948069,0.0009925298,0.0005229447,0.02167453],"genre_scores_gemma":[0.03534167,0.0004153792,0.0003950858,0.560482,0.02608943,0.0001602795,0.006656362,0.0004732893,0.3699865],"genre_candidate":"commentary","genre_consensus":"commentary","teacher_disagreement_score":0.348312,"threshold_uncertainty_score":0.9997188,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0568771714351433,"score_gpt":0.3475432913997648,"score_spread":0.2906661199646215,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}