{"id":"W2976225444","doi":"10.1093/sysbio/syz062","title":"Interrogating Genomic-Scale Data for Squamata (Lizards, Snakes, and Amphisbaenians) Shows no Support for Key Traditional Morphological Relationships","year":2019,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Amphibian and Reptile Biology","field":"Environmental Science","cited_by":318,"is_retracted":false,"has_abstract":true,"ca_institutions":"Royal Ontario Museum","funders":"Fundação de Amparo à Pesquisa do Estado de São Paulo; National Science Foundation","keywords":"Squamata; Biology; Phylogenetic tree; Evolutionary biology; Clade; Phylogenetics; Genomics; Supermatrix; Genome; Zoology; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000768791,0.0003009413,0.0004322639,0.001929686,0.0006617167,0.0008774838,0.0003826815,0.0004658543,0.0009899263],"category_scores_gemma":[0.00456412,0.0001550108,0.0004181895,0.002241663,0.0005241793,0.0006773078,0.0005987938,0.0005172296,0.0004934592],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000190285,"about_ca_system_score_gemma":0.0001964218,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006679495,"about_ca_topic_score_gemma":0.002897493,"domain_scores_codex":[0.9992828,0.0001733717,0.00006108445,0.0002622657,0.0001758646,0.00004466005],"domain_scores_gemma":[0.9945819,0.002841787,0.001502322,0.0005554499,0.0003430598,0.000175594],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002041714,0.0001120008,0.6926903,0.0006286752,0.0005360289,0.0003353772,0.001492802,0.003210038,0.2524212,0.00108857,0.0002878046,0.04699306],"study_design_scores_gemma":[0.00000684808,0.0001661166,0.9668333,0.00007658373,0.0001878145,0.0008641064,0.0009916539,0.006005975,0.01849769,0.0017314,0.004610612,0.000027994],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9922139,0.0005616244,0.004227543,0.00006419343,0.000005436745,0.000007077894,0.002072563,0.00004833321,0.000799319],"genre_scores_gemma":[0.9901404,0.0002558855,0.006057811,0.00004286692,0.00001071095,0.00001330205,0.003355658,0.00001261382,0.0001106685],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001929686,"threshold_uncertainty_score":0.004065812,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08296987275519489,"score_gpt":0.2704782234482174,"score_spread":0.1875083506930225,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}