{"id":"W2976225444","doi":"10.1093/sysbio/syz062","title":"Interrogating Genomic-Scale Data for Squamata (Lizards, Snakes, and Amphisbaenians) Shows no Support for Key Traditional Morphological Relationships","year":2019,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Amphibian and Reptile Biology","field":"Environmental Science","cited_by":318,"is_retracted":false,"has_abstract":true,"ca_institutions":"Royal Ontario Museum","funders":"Fundação de Amparo à Pesquisa do Estado de São Paulo; National Science Foundation","keywords":"Squamata; Biology; Phylogenetic tree; Evolutionary biology; Clade; Phylogenetics; Genomics; Supermatrix; Genome; Zoology; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.001330811,0.0001786944,0.0004826053,0.00003259965,0.0001542367,0.0000213523,0.0004999933,0.0002880378,0.00110423],"category_scores_gemma":[0.0003996125,0.0001274229,0.00007637262,0.00004122112,0.000306483,0.0001032382,0.0003819868,0.0001263586,0.0003992903],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006818211,"about_ca_system_score_gemma":0.00002033643,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001109198,"about_ca_topic_score_gemma":0.0001103538,"domain_scores_codex":[0.9981303,0.0002480954,0.0005797838,0.0006502317,0.00006886864,0.0003227176],"domain_scores_gemma":[0.9982746,0.0007554456,0.0002491718,0.0006099852,0.00001674414,0.00009401398],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.0006033424,0.0005859093,0.6980056,0.02209431,0.0004508256,0.00001273023,0.003428918,0.000251103,0.2094543,0.04006386,0.02435074,0.0006983165],"study_design_scores_gemma":[0.02170583,0.01283345,0.2450904,0.004318486,0.001528817,0.005084942,0.01590373,0.5455009,0.00110858,0.06971757,0.07027502,0.006932288],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9710336,0.0001104983,0.01968747,0.0005796143,0.0007672582,0.004120836,0.001591396,0.00007173773,0.002037548],"genre_scores_gemma":[0.9796097,0.000002810384,0.01783411,0.0002368545,0.0001065434,0.000259128,0.00124618,0.00001607423,0.0006885646],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5452499,"threshold_uncertainty_score":0.9998089,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08296987275519489,"score_gpt":0.2704782234482174,"score_spread":0.1875083506930225,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}