{"id":"W2976340293","doi":"10.3390/genes10100739","title":"Genomic Analyses Identify Novel Molecular Signatures Specific for the Caenorhabditis and other Nematode Taxa Providing Novel Means for Genetic and Biochemical Studies","year":2019,"lang":"en","type":"article","venue":"Genes","topic":"Nematode management and characterization studies","field":"Agricultural and Biological Sciences","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Caenorhabditis; Caenorhabditis elegans; Phylogenetic tree; Clade; Evolutionary biology; Phylum; Indel; Genome; Phylogenetics; Nematode; Genetics; Computational biology; Gene; Ecology; Single-nucleotide polymorphism","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000101539,0.0001473253,0.0002055327,0.00001455987,0.0002562086,0.000115838,0.0001249433,0.00004195585,0.00001146536],"category_scores_gemma":[0.00001961474,0.00005552699,0.00006904342,0.00008840385,0.00008203111,0.0000423989,0.0001024639,0.00002689418,0.000001540351],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000006383785,"about_ca_system_score_gemma":0.000001792336,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001351927,"about_ca_topic_score_gemma":0.00003365078,"domain_scores_codex":[0.9992405,0.000009019618,0.0001649956,0.0003122713,0.00009263481,0.0001805791],"domain_scores_gemma":[0.9995043,0.0002561154,0.00009221123,0.00005706506,0.00006542391,0.00002494443],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001765174,0.00001557184,0.003333107,0.00006439214,0.0001539741,1.667944e-7,0.0001291249,0.00001845406,0.9927014,0.0003870091,0.0002899233,0.002889246],"study_design_scores_gemma":[0.002411244,0.0004456695,0.36455,0.0001669513,0.0007213461,0.00001966261,0.01443266,0.002635624,0.3891305,0.001539071,0.2225381,0.001409121],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9776205,0.01906623,0.001512831,0.0007366768,0.0001120201,0.000818868,0.00009688753,0.00002244294,0.0000135381],"genre_scores_gemma":[0.9970948,0.0008941579,0.001106692,0.0003575878,0.0001912198,0.0001479995,0.00001753641,0.000003511495,0.0001865303],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6035709,"threshold_uncertainty_score":0.2264325,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08242835940771344,"score_gpt":0.3070995014959052,"score_spread":0.2246711420881918,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}