{"id":"W2976396569","doi":"10.1080/15476286.2019.1667214","title":"Neuronal-specific microexon splicing of <i>TAF1</i> mRNA is directly regulated by SRRM4/nSR100","year":2019,"lang":"en","type":"article","venue":"RNA Biology","topic":"RNA Research and Splicing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":28,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"Deutschen Konsortium für Translationale Krebsforschung; Deutsche Forschungsgemeinschaft; Universität Konstanz; Saks-Kavanaugh Foundation","keywords":"TAF1; Biology; RNA splicing; Gene knockdown; Alternative splicing; Messenger RNA; Cell biology; Transcription factor II D; Gene isoform; Molecular biology; Genetics; RNA; Gene expression; Gene; RNA polymerase; Promoter","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002236262,0.0002086272,0.0003142713,0.00007527007,0.00005535115,0.00001358667,0.0003589132,0.0002714922,0.0001704204],"category_scores_gemma":[0.00002827198,0.0001875698,0.0001387586,0.0001546804,0.0001357805,0.000004654884,0.0001790389,0.0001725553,0.00007921398],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001771874,"about_ca_system_score_gemma":0.00005141933,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001440846,"about_ca_topic_score_gemma":0.000009105913,"domain_scores_codex":[0.9983654,0.0001238929,0.0003346751,0.0005571806,0.0001145443,0.000504321],"domain_scores_gemma":[0.9990334,0.00003505163,0.0001423515,0.0005661686,0.0001069303,0.0001161024],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001600863,0.00004447341,0.00460726,0.00002075407,0.00005194511,0.000001415188,0.00001822277,0.000005431073,0.9715689,0.0000520479,0.02062581,0.0028437],"study_design_scores_gemma":[0.0006030164,0.000504994,0.001004272,0.00001604399,0.000005239838,0.0000113079,0.00001621469,0.00006082695,0.8622531,0.00003108828,0.1353181,0.0001758174],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9942271,0.002270225,0.0001690473,0.000448873,0.0001912848,0.0002387192,0.00008968435,0.00001502906,0.002350041],"genre_scores_gemma":[0.9904165,0.001419233,0.0001617948,0.0005834152,0.0001198646,0.000007381767,0.000270105,0.00003353934,0.006988162],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1146923,"threshold_uncertainty_score":0.7648875,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007821725435240949,"score_gpt":0.2448171265218001,"score_spread":0.2369954010865591,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}