{"id":"W2976488130","doi":"10.3389/fmicb.2019.02219","title":"Staphylococcus aureus ST398 Virulence Is Associated With Factors Carried on Prophage ϕSa3","year":2019,"lang":"en","type":"article","venue":"Frontiers in Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":43,"is_retracted":false,"has_abstract":true,"ca_institutions":"Alberta Health Services; University of Calgary","funders":"Canadian Institutes of Health Research; Alberta Health Services","keywords":"Prophage; Virulence; Staphylococcus aureus; Microbiology; Biology; Virology; Genetics; Gene; Bacteria; Escherichia coli; Bacteriophage","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001003752,0.0002683313,0.0001232845,0.0002893525,0.0001087198,0.0002265598,0.00009031475,0.0001712205,0.0007617566],"category_scores_gemma":[0.0002820091,0.00008063009,0.0002053377,0.0003422851,0.000134248,0.0001071795,0.0002050882,0.0002396828,0.0001684265],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001390591,"about_ca_system_score_gemma":0.000190841,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001485486,"about_ca_topic_score_gemma":0.0009883135,"domain_scores_codex":[0.9998357,0.00001740636,0.00002221377,0.00002927032,0.00005483644,0.00004051437],"domain_scores_gemma":[0.999783,0.00002938983,0.00009828943,0.00001646757,0.00003379889,0.00003894493],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002349884,0.00004386999,0.04489525,0.00003976642,0.00001878445,0.000262071,0.00006374176,0.00004964545,0.952133,0.00003120582,0.00003252718,0.002195284],"study_design_scores_gemma":[0.00002179354,0.0009854137,0.7454546,0.00002744807,0.00008722471,0.003840163,0.0003395559,0.001050089,0.246826,0.0001581891,0.001190273,0.00001927614],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9994031,0.00008598893,0.0001742714,0.00001123806,0.000001912752,0.000005925104,0.000114526,0.000003304728,0.000199621],"genre_scores_gemma":[0.9990485,0.00007808337,0.0003333904,0.000008763369,0.000002320054,0.000005758976,0.0003354753,0.000002214366,0.0001856041],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001485486,"threshold_uncertainty_score":0.002953649,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008599602808535785,"score_gpt":0.2311005749339438,"score_spread":0.222500972125408,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}