{"id":"W2976488130","doi":"10.3389/fmicb.2019.02219","title":"Staphylococcus aureus ST398 Virulence Is Associated With Factors Carried on Prophage ϕSa3","year":2019,"lang":"en","type":"article","venue":"Frontiers in Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":43,"is_retracted":false,"has_abstract":true,"ca_institutions":"Alberta Health Services; University of Calgary","funders":"Canadian Institutes of Health Research; Alberta Health Services","keywords":"Prophage; Virulence; Staphylococcus aureus; Microbiology; Biology; Virology; Genetics; Gene; Bacteria; Escherichia coli; Bacteriophage","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002427343,0.000488009,0.001050591,0.0004148791,0.00007939617,0.00002100728,0.0003567062,0.0005029379,0.0002990285],"category_scores_gemma":[0.000168827,0.0003778687,0.0001605145,0.0005797857,0.0003637433,0.00008238787,0.000071551,0.0007646403,0.0001262681],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006117249,"about_ca_system_score_gemma":0.0002940129,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005654796,"about_ca_topic_score_gemma":0.00006111131,"domain_scores_codex":[0.9973841,0.0001697236,0.0004893388,0.0008917269,0.0001659844,0.0008991837],"domain_scores_gemma":[0.9985884,0.0001191179,0.0002785476,0.0007093993,0.0001537021,0.0001507643],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001374395,0.0002590927,0.5265751,0.00006890275,0.0002514416,0.0001605815,0.0006559336,0.00002078083,0.4429193,0.00003218057,0.02747903,0.0002032234],"study_design_scores_gemma":[0.01936899,0.007426766,0.3946045,0.002306618,0.0003914209,0.00005289164,0.003331261,0.0001482758,0.5192313,0.0002365504,0.05023236,0.002669126],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9946083,0.0004297394,0.0003079636,0.0002336716,0.001002777,0.00152974,0.0003342997,0.0001085339,0.001444905],"genre_scores_gemma":[0.9934623,0.00004691123,0.001391028,0.001504706,0.00004713961,0.00002744123,0.0001993257,0.00007550961,0.003245661],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1319707,"threshold_uncertainty_score":0.9998673,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008599602808535785,"score_gpt":0.2311005749339438,"score_spread":0.222500972125408,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}