{"id":"W2977884694","doi":"10.82308/48164","title":"Ancient transposable elements discovery and annotation","year":2015,"lang":"en","type":"article","venue":"eScholarship@McGill (McGill)","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Division of Graduate Education; Natural Sciences and Engineering Research Council of Canada; McGill University","keywords":"Genome; Transposable element; Annotation; Genome project; Human genome; Genomics; Computational biology; Biology; DNA sequencing; Comparative genomics; Pipeline (software); Genetics; Reference genome; Hybrid genome assembly; Computer science; Gene","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009022532,0.001137858,0.001253673,0.003470989,0.001056524,0.001982351,0.001440872,0.001232725,0.007004605],"category_scores_gemma":[0.002862526,0.000574856,0.001712346,0.003092479,0.0004380991,0.00130442,0.001486221,0.001243684,0.005862484],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005593587,"about_ca_system_score_gemma":0.001722551,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004245373,"about_ca_topic_score_gemma":0.007496224,"domain_scores_codex":[0.9990608,0.00008916193,0.00007275234,0.000359132,0.0003134261,0.0001046641],"domain_scores_gemma":[0.9992034,0.0002477086,0.00007786613,0.0001373443,0.0002651019,0.00006855965],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001124822,0.0001964686,0.02850164,0.003530237,0.0004282371,0.002205382,0.001777787,0.01508167,0.2285368,0.01663564,0.02899049,0.6729909],"study_design_scores_gemma":[0.00017003,0.0004183888,0.04307451,0.0008577665,0.0007889905,0.005586461,0.001601879,0.2258562,0.2942682,0.03096671,0.3960934,0.0003175612],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.1299687,0.00619797,0.7815012,0.0007414527,0.0004896466,0.0005075239,0.03634331,0.02645552,0.01779463],"genre_scores_gemma":[0.1548017,0.003345759,0.743843,0.000396923,0.0001140925,0.0004434935,0.06535517,0.002748714,0.02895126],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.007004605,"threshold_uncertainty_score":0.02343279,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0275852756472033,"score_gpt":0.2173966748516535,"score_spread":0.1898113992044502,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}