{"id":"W2978023286","doi":"10.1016/j.cmet.2019.09.011","title":"Polysaccharide Protection: How Bacteroides thetaiotaomicron Survives an Antibiotic Attack","year":2019,"lang":"en","type":"letter","venue":"Cell Metabolism","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":false,"ca_institutions":"McGill University","funders":"Fonds de recherche du Québec – Nature et technologies; McGill University; Canadian Institute for Advanced Research","keywords":"Bacteroides thetaiotaomicron; Bacteroides; Microbiome; Antibiotics; Biology; Gut flora; Microbiology; Gut microbiome; Bacteria; Immunology; Bioinformatics; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0002683572,0.0006584503,0.0007169417,0.0001614314,0.0001667615,0.0002099698,0.0006535663,0.001596171,0.00005860878],"category_scores_gemma":[0.00002293064,0.0006020256,0.0003307596,0.0001127337,0.0001239483,0.00001618908,0.0001894678,0.001247374,0.0002332799],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002838131,"about_ca_system_score_gemma":0.0002743539,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001113484,"about_ca_topic_score_gemma":0.00002293657,"domain_scores_codex":[0.9970739,0.0003885324,0.000344631,0.001184341,0.00020485,0.0008037454],"domain_scores_gemma":[0.9980141,0.00001383073,0.0003823535,0.001334638,0.0001441915,0.0001108829],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00002151174,0.0000385149,0.00006584049,0.0002793889,0.00005651118,0.00001026997,0.00003396446,0.000001395706,0.7025118,0.00000106272,0.2966304,0.0003492387],"study_design_scores_gemma":[0.0004257047,0.0001413313,0.001292843,0.00003074271,0.00009789442,0.00003676046,0.00003082248,0.000003228779,0.2367994,0.000004129467,0.760567,0.0005701349],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"commentary","genre_scores_codex":[0.842504,0.01197068,0.0002433365,0.1362073,0.005245465,0.002130997,0.0004204164,0.0001052897,0.001172585],"genre_scores_gemma":[0.3450406,0.004901609,0.001398221,0.4915921,0.03421053,0.00006931613,0.005093769,0.0007495129,0.1169444],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.4974634,"threshold_uncertainty_score":0.9997,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02504747401649483,"score_gpt":0.2448888587647979,"score_spread":0.2198413847483031,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}