{"id":"W2978117980","doi":"10.1128/mra.00933-19","title":"Whole-Genome Sequencing of <i>Mycobacterium tilburgii</i> Strain MEPHI","year":2019,"lang":"en","type":"article","venue":"Microbiology Resource Announcements","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"Centre Hospitalier de l’Université de Montréal","funders":"National Eye Institute; Conseil Régional Provence-Alpes-Côte d'Azur; CHIST-ERA; Agence Nationale de la Recherche","keywords":"Fastidious organism; Whole genome sequencing; Biology; Phylogenetic tree; Mycobacterium; Genome; Strain (injury); Microbiology; DNA sequencing; Genetics; Gene; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002220007,0.0003882077,0.000439201,0.0005100513,0.0003406704,0.000509509,0.0002625383,0.0004170026,0.001574554],"category_scores_gemma":[0.0007250254,0.000178676,0.0004959184,0.001118572,0.0001552175,0.0002476502,0.0003485974,0.0006891598,0.001381369],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003196513,"about_ca_system_score_gemma":0.0005738901,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.006000136,"about_ca_topic_score_gemma":0.006890757,"domain_scores_codex":[0.9997962,0.00001834573,0.00002017059,0.00006314402,0.00006809711,0.00003413499],"domain_scores_gemma":[0.9996099,0.0000993188,0.00007073168,0.00005764831,0.0001100876,0.00005224079],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000375963,0.00003539153,0.00283886,0.0002307624,0.00003357604,0.0002861518,0.0002194399,0.0002266373,0.9849724,0.000120441,0.002013666,0.008646715],"study_design_scores_gemma":[0.0001958277,0.0008422249,0.3920729,0.0002049718,0.0004704915,0.002511171,0.0009354775,0.004287718,0.4883463,0.0004809226,0.1095595,0.00009247107],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8472776,0.001193056,0.01170619,0.0006313869,0.0001323155,0.0003473733,0.1320539,0.0006695824,0.005988627],"genre_scores_gemma":[0.6289996,0.001522461,0.03713467,0.0005366801,0.00008928408,0.0003329784,0.3231836,0.0004906561,0.007709986],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.006000136,"threshold_uncertainty_score":0.01193041,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01761137041539372,"score_gpt":0.2577563306141369,"score_spread":0.2401449601987432,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}