{"id":"W2978156923","doi":"10.1101/788521","title":"Pathway Commons: 2019 Update","year":2019,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bioinformatics and Genomic Networks","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"Army Research Office; Defense Advanced Research Projects Agency; National Institutes of Health","keywords":"Computer science; World Wide Web; Usability; Python (programming language); JavaScript; Java; Software; Computational biology; Programming language; Biology; Human–computer interaction","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.004255712,0.001469956,0.001159045,0.007694992,0.000957949,0.007317062,0.003463756,0.002366956,0.2427261],"category_scores_gemma":[0.01583852,0.001031411,0.00106982,0.008238864,0.0005801116,0.004591923,0.004575949,0.002789486,0.2277447],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002703892,"about_ca_system_score_gemma":0.006063801,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.007606608,"about_ca_topic_score_gemma":0.008460826,"domain_scores_codex":[0.9979628,0.0002761854,0.000254622,0.0002742946,0.0008987259,0.0003334438],"domain_scores_gemma":[0.990838,0.001670111,0.0007553184,0.001204556,0.003259411,0.002272483],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001879342,0.00001704298,0.0002543293,0.0004897799,0.00001522713,0.00005828052,0.00001737326,0.0001535143,0.0001991482,0.001778276,0.9652488,0.03158035],"study_design_scores_gemma":[0.00001870293,0.00000657225,0.000344718,0.0001958411,0.000007214619,0.00005777387,0.000009261908,0.00004355672,0.0001305841,0.0007277133,0.9984479,0.00001016678],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"dataset","genre_scores_codex":[0.001614822,0.01101429,0.008207018,0.01745146,0.01141181,0.000315117,0.7983135,0.03501571,0.1166562],"genre_scores_gemma":[0.004953758,0.01221723,0.006773103,0.005102256,0.001921381,0.0005482649,0.8844262,0.009535487,0.07452226],"genre_candidate":"dataset","genre_consensus":"dataset","teacher_disagreement_score":0.2427261,"threshold_uncertainty_score":0.8119997,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007549398073868056,"score_gpt":0.1992985384822095,"score_spread":0.1917491404083414,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}