{"id":"W2978577731","doi":"10.1139/gen-2019-0112","title":"Genome and transcriptome analysis of the latent pathogen <i>Lasiodiplodia theobromae</i>, an emerging threat to the cacao industry","year":2019,"lang":"en","type":"article","venue":"Genome","topic":"Cocoa and Sweet Potato Agronomy","field":"Agricultural and Biological Sciences","cited_by":51,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Agricultural Research Service; U.S. Department of Agriculture","keywords":"Lasiodiplodia theobromae; Biology; Transcriptome; Gene; Genome; Mycelium; Botany; Virulence; Genetics; Fungus; Canker; Gene expression","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001172661,0.0003830153,0.0003927823,0.0004883252,0.000345624,0.0004595428,0.000230911,0.000256908,0.000598391],"category_scores_gemma":[0.0002263115,0.0001502109,0.0005418925,0.0006223186,0.000128054,0.0002016428,0.00021655,0.0004382141,0.0003129131],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004527936,"about_ca_system_score_gemma":0.0004371475,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005423537,"about_ca_topic_score_gemma":0.005873265,"domain_scores_codex":[0.9999157,0.000004871273,0.000005139259,0.00003867995,0.00002379251,0.00001172281],"domain_scores_gemma":[0.9998534,0.00003299742,0.00004484902,0.000009151813,0.00002845953,0.00003114195],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003342248,0.00004657256,0.005159589,0.0003019576,0.00004083362,0.0003853216,0.0002611105,0.0005250032,0.9868219,0.00008874719,0.0002397955,0.005794872],"study_design_scores_gemma":[0.00009406351,0.0008375311,0.7922137,0.0001481281,0.0006388509,0.001992526,0.001037645,0.01143542,0.158888,0.0003794525,0.03225296,0.00008167035],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9757923,0.001526649,0.002909982,0.0001686523,0.00002807131,0.00004722764,0.01819775,0.0001408003,0.001188703],"genre_scores_gemma":[0.865256,0.002265783,0.01893835,0.0001839686,0.00004295021,0.00009551321,0.1095242,0.0002007284,0.003492647],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.005423537,"threshold_uncertainty_score":0.01078397,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01759141713525645,"score_gpt":0.2141799932714924,"score_spread":0.196588576136236,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}