{"id":"W2978577731","doi":"10.1139/gen-2019-0112","title":"Genome and transcriptome analysis of the latent pathogen <i>Lasiodiplodia theobromae</i>, an emerging threat to the cacao industry","year":2019,"lang":"en","type":"article","venue":"Genome","topic":"Cocoa and Sweet Potato Agronomy","field":"Agricultural and Biological Sciences","cited_by":51,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Agricultural Research Service; U.S. Department of Agriculture","keywords":"Lasiodiplodia theobromae; Biology; Transcriptome; Gene; Genome; Mycelium; Botany; Virulence; Genetics; Fungus; Canker; Gene expression","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002931719,0.0001524539,0.0002652421,0.00002696833,0.0002010818,0.00005240739,0.0005108219,0.000108225,0.000640986],"category_scores_gemma":[0.000005002562,0.00004406865,0.000186496,0.0008741093,0.00005213527,0.00007972689,0.0001307932,0.0001813111,0.00002558407],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001889263,"about_ca_system_score_gemma":0.00000904757,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003073244,"about_ca_topic_score_gemma":0.0007060262,"domain_scores_codex":[0.9988579,0.0001045225,0.0002260684,0.0003241709,0.0002016176,0.0002857234],"domain_scores_gemma":[0.9995031,0.00005073619,0.00007674816,0.0002082826,0.00003848285,0.0001226486],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00001733338,0.0000389656,0.1105918,0.000004257221,0.0001627168,9.669842e-7,0.003980772,0.0004432871,0.8811413,0.0001257513,0.00000457216,0.003488271],"study_design_scores_gemma":[0.00006851584,0.000101414,0.986237,0.000003564228,0.0001761961,0.000002028608,0.001048195,0.0000390173,0.000232707,0.00006182704,0.01189548,0.0001340218],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9966437,0.0003139732,0.00000150012,0.001909241,0.00007357373,0.000416995,0.00007696958,0.00001896375,0.0005450384],"genre_scores_gemma":[0.9989874,0.00002587358,0.000009252667,0.0004520732,0.00008291234,0.00001701521,0.00003608967,0.000001499136,0.0003879052],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8809085,"threshold_uncertainty_score":0.7018347,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01759141713525645,"score_gpt":0.2141799932714924,"score_spread":0.196588576136236,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}