{"id":"W2979223145","doi":"10.1172/jci.insight.130848","title":"Transmission and clearance of potential procarcinogenic bacteria during fecal microbiota transplantation for recurrent Clostridioides difficile","year":2019,"lang":"en","type":"article","venue":"JCI Insight","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":63,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Cancer Institute; Canadian Institutes of Health Research; Bloomberg~Kimmel Institute for Cancer Immunotherapy, Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins University; Crohn's and Colitis Foundation; Johns Hopkins University; Robert Wood Johnson Medical School, Rutgers, The State University of New Jersey; School of Medicine, Stanford University; Eunice Kennedy Shriver National Institute of Child Health and Human Development; Crohn's and Colitis Foundation of America","keywords":"Clostridioides; Bacteroides fragilis; Microbiology; Fusobacterium nucleatum; Feces; Bacteroidaceae; Transplantation; Bacteria; Fecal bacteriotherapy; Clostridium difficile; Biology; C difficile; Medicine; Bacteroides; Internal medicine; Antibiotics","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001091061,0.0002072314,0.000415868,0.0001603986,0.00008635699,0.00002344492,0.00008854329,0.0001605975,0.0001411889],"category_scores_gemma":[0.00001816041,0.0001768232,0.0001818099,0.0001862845,0.0000706134,0.00008563035,0.0000237775,0.0002122255,0.00001522655],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006947413,"about_ca_system_score_gemma":0.0001175349,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001785292,"about_ca_topic_score_gemma":0.000003371736,"domain_scores_codex":[0.9985024,0.00003830826,0.000414923,0.0004200706,0.0002817549,0.0003425647],"domain_scores_gemma":[0.9993328,0.00005304071,0.00009196853,0.0002303418,0.0001417749,0.0001501082],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.006875746,0.0002829334,0.0007405051,0.002323745,0.00005620355,0.00001441905,0.0003833454,0.000006530131,0.9817335,0.00002444184,0.00006813757,0.007490502],"study_design_scores_gemma":[0.004908009,0.001325962,0.04910091,0.0004774283,0.0001407784,0.0001211239,0.00006093077,0.0004722434,0.9415344,0.000006786701,0.001660861,0.0001905571],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9962536,0.001442585,0.0001290423,0.000299111,0.0001633367,0.001372842,0.0000933845,0.00003469565,0.0002114474],"genre_scores_gemma":[0.9972997,0.001554758,0.0003756271,0.00001618349,0.0001434047,0.00003107992,0.0001316205,0.00003640676,0.0004112276],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0483604,"threshold_uncertainty_score":0.7210642,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01211908744386372,"score_gpt":0.2594219131419671,"score_spread":0.2473028256981034,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}