{"id":"W2979585710","doi":"10.1101/799197","title":"The relative contributions of infectious and mitotic spread to HTLV-1 persistence","year":2019,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"T-cell and Retrovirus Studies","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"Fleming College","funders":"Medical Research Council; Department for International Development; Imperial College London; Wellcome Trust; Leukemia and Lymphoma Research; Imperial College Healthcare NHS Trust; National Institute for Health and Care Research; NIHR Biomedical Research Centre, Royal Marsden NHS Foundation Trust/Institute of Cancer Research; European Commission; Bill and Melinda Gates Foundation","keywords":"Biology; Virology; Infectious disease (medical specialty); Persistence (discontinuity); Mitosis; Population; Robustness (evolution); Immunology; Disease; Genetics; Demography; Gene; Medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003762262,0.0003435364,0.0005543068,0.0001258699,0.0004951897,0.00004110409,0.0003241114,0.0005203037,0.00001312736],"category_scores_gemma":[0.0006200121,0.0002581913,0.0001511695,0.0002185047,0.0005587146,0.0000516492,0.000692503,0.0007536904,0.0002075153],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001334048,"about_ca_system_score_gemma":0.0002395334,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001410533,"about_ca_topic_score_gemma":0.0000142432,"domain_scores_codex":[0.9983429,0.0002129287,0.0003877215,0.0005529219,0.0000625967,0.0004409054],"domain_scores_gemma":[0.997983,0.0004129862,0.0003241488,0.0007062232,0.0005204928,0.00005315532],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00007033044,0.0000835674,0.01893474,0.000133644,0.0009243157,0.000003654958,0.0001139965,0.00001763001,0.9758282,0.003010794,0.0008754655,0.000003702327],"study_design_scores_gemma":[0.001619147,0.0004898736,0.2145815,0.0007950298,0.0006881794,1.712829e-7,0.00009050163,0.00001053301,0.7443507,0.00002104081,0.0363443,0.001008977],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9718333,0.02191748,0.0007601608,0.0006889991,0.003015841,0.001023097,0.0005375686,0.0001357742,0.00008777992],"genre_scores_gemma":[0.9984288,0.00111148,0.00008641223,0.00006832927,0.00006112864,0.00008444267,3.199335e-7,0.00002979182,0.0001292941],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2314774,"threshold_uncertainty_score":0.999987,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01024650602975698,"score_gpt":0.2110081796843454,"score_spread":0.2007616736545884,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}