{"id":"W2979715961","doi":"10.1016/j.tree.2019.08.008","title":"The New Tree of Eukaryotes","year":2019,"lang":"en","type":"review","venue":"Trends in Ecology & Evolution","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":919,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University","funders":"Division of Environmental Biology; Natural Sciences and Engineering Research Council of Canada; National Science Foundation; Vetenskapsrådet; Carl Tryggers Stiftelse för Vetenskaplig Forskning; Science for Life Laboratory; Svenska Forskningsrådet Formas","keywords":"Tree (set theory); Evolutionary biology; Biology; Computational biology; Computer science; Mathematics; Combinatorics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002069491,0.0001892315,0.000529894,0.0001356092,0.00006017578,0.000004742398,0.0004093219,0.0005521338,0.00003318771],"category_scores_gemma":[0.00005888077,0.0001464342,0.0002850656,0.0002046544,0.0001288688,0.000002035134,0.0001854606,0.0001916734,0.00004560503],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007062568,"about_ca_system_score_gemma":0.0002806766,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004150538,"about_ca_topic_score_gemma":0.001093282,"domain_scores_codex":[0.9988942,0.0001937296,0.0003117672,0.0002955289,0.00006467479,0.000240059],"domain_scores_gemma":[0.9992235,0.00006044455,0.000254844,0.0004034875,0.00002415132,0.00003362554],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00003052426,0.00004678829,0.004558934,0.0004255739,0.0001487098,0.000001309388,0.000009476217,0.000006565152,0.00002411259,0.0005128536,0.01110641,0.9831287],"study_design_scores_gemma":[0.0003019168,0.0002771139,0.02335395,0.000197997,0.0002334534,0.00001480242,0.000005869465,0.000003415375,0.00002152064,0.000211156,0.9751967,0.0001821684],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0003297368,0.9970338,0.00002905173,0.00004045683,0.0004549241,0.0001908957,0.00003774231,0.00000454025,0.00187888],"genre_scores_gemma":[0.003210891,0.989321,0.00005651641,0.00001073569,0.0001619896,0.00001615725,0.000332743,0.00001401189,0.006875957],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9829466,"threshold_uncertainty_score":0.5971415,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03109290485361059,"score_gpt":0.3077343001587003,"score_spread":0.2766413953050897,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}