{"id":"W2980015707","doi":"10.1128/mra.00625-19","title":"Eleven High-Quality Reference Genome Sequences and 360 Draft Assemblies of Shiga Toxin-Producing Escherichia coli Isolates from Human, Food, Animal, and Environmental Sources in Canada","year":2019,"lang":"en","type":"article","venue":"Microbiology Resource Announcements","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":true,"ca_institutions":"Simon Fraser University; University of Manitoba; Public Health Agency of Canada","funders":"Genome British Columbia; Government of Canada; Genome Canada","keywords":"Escherichia coli; Shiga toxin; Microbiology; Biology; Genome; Strain (injury); Toxin; Metadata; Shiga-like toxin; Gene; Genetics; World Wide Web","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003312779,0.0002549026,0.0004132695,0.00005038414,0.0001254911,0.00002355332,0.000271752,0.0001440321,0.00003015609],"category_scores_gemma":[0.00004370881,0.0002410607,0.00002559965,0.00008049684,0.0003256205,0.00001209542,0.0005983175,0.0001929202,0.000001682616],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009661246,"about_ca_system_score_gemma":0.0001632803,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.1270692,"about_ca_topic_score_gemma":0.1894971,"domain_scores_codex":[0.9981197,0.0002463149,0.0004092771,0.0006985709,0.0001034359,0.000422724],"domain_scores_gemma":[0.9993145,0.00005837299,0.0002095034,0.0003200296,0.00003137631,0.00006619402],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00009138399,0.00002878832,0.3458843,0.00002920423,0.00011117,0.000001079405,0.0001870931,0.000009357123,0.6535771,0.000004168663,0.00004951523,0.00002691419],"study_design_scores_gemma":[0.002171339,0.002064606,0.7053438,0.00009231893,0.00004101379,0.000007281293,0.007157907,0.00001285813,0.2443497,0.00005978689,0.03787234,0.0008270073],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9936271,0.004495325,0.000001508561,0.000102307,0.00002438575,0.0003210843,0.001344738,0.000004856216,0.00007872961],"genre_scores_gemma":[0.9976224,0.0004327555,0.0001484402,0.0002204585,0.0000330385,0.00002155229,0.001320172,0.00001609616,0.0001851345],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4092274,"threshold_uncertainty_score":0.9830168,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01507162459756592,"score_gpt":0.2419855338915642,"score_spread":0.2269139092939983,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}