{"id":"W2980015707","doi":"10.1128/mra.00625-19","title":"Eleven High-Quality Reference Genome Sequences and 360 Draft Assemblies of Shiga Toxin-Producing Escherichia coli Isolates from Human, Food, Animal, and Environmental Sources in Canada","year":2019,"lang":"en","type":"article","venue":"Microbiology Resource Announcements","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":true,"ca_institutions":"Simon Fraser University; University of Manitoba; Public Health Agency of Canada","funders":"Genome British Columbia; Government of Canada; Genome Canada","keywords":"Escherichia coli; Shiga toxin; Microbiology; Biology; Genome; Strain (injury); Toxin; Metadata; Shiga-like toxin; Gene; Genetics; World Wide Web","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001909308,0.001492366,0.001275699,0.004882625,0.00361867,0.002699476,0.002103715,0.0008415602,0.00513935],"category_scores_gemma":[0.00502213,0.0009498689,0.001191972,0.01668209,0.0008104271,0.0007495586,0.001284618,0.00130616,0.002406642],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.01281839,"about_ca_system_score_gemma":0.03483509,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.8028656,"about_ca_topic_score_gemma":0.8878637,"domain_scores_codex":[0.997491,0.0001367046,0.0002480136,0.0006429582,0.0009815829,0.0004996786],"domain_scores_gemma":[0.9953865,0.0003268078,0.0002959756,0.0004256989,0.00309677,0.0004682228],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.006922189,0.0005907314,0.09263561,0.00672106,0.00112048,0.00232897,0.01065218,0.02674884,0.4105615,0.006831349,0.1094788,0.3254083],"study_design_scores_gemma":[0.0004834713,0.0004879011,0.3563477,0.001268156,0.001218559,0.000886936,0.004101912,0.01193275,0.08963641,0.002082685,0.5311087,0.0004448457],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"dataset","genre_gemma":"empirical","genre_scores_codex":[0.2804717,0.004776777,0.0260927,0.0006312963,0.0002084468,0.000649209,0.6694832,0.002925182,0.01476151],"genre_scores_gemma":[0.09758673,0.003656591,0.05292001,0.0001842568,0.00001996492,0.0002736064,0.8358408,0.0007044853,0.008813608],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.1971344,"threshold_uncertainty_score":0.3965907,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01507162459756592,"score_gpt":0.2419855338915642,"score_spread":0.2269139092939983,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}