{"id":"W2980061474","doi":"10.1093/conphys/coz051","title":"Discovery and validation of candidate smoltification gene expression biomarkers across multiple species and ecotypes of Pacific salmonids","year":2019,"lang":"en","type":"article","venue":"Conservation Physiology","topic":"Aquaculture Nutrition and Growth","field":"Agricultural and Biological Sciences","cited_by":44,"is_retracted":false,"has_abstract":true,"ca_institutions":"Simon Fraser University; University of British Columbia; Fisheries and Oceans Canada","funders":"Natural Sciences and Engineering Research Council of Canada; Genome British Columbia; Pacific Salmon Commission","keywords":"Biology; Ecotype; Smoltification; Gene expression; Ecology; Evolutionary biology; Gene; Fish <Actinopterygii>; Computational biology; Fishery; Genetics; Salmonidae; Salmo","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009387628,0.00007375445,0.0001518189,0.00001056348,0.00005918997,0.00001420008,0.00004290141,0.00007527106,0.00002746185],"category_scores_gemma":[0.00003617526,0.00003313438,0.00002533108,0.000108265,0.0001390398,0.0001899926,0.0000354421,0.00003003161,0.000001852605],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000005163159,"about_ca_system_score_gemma":0.000003611518,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001133375,"about_ca_topic_score_gemma":0.00003909421,"domain_scores_codex":[0.9994136,0.00006622035,0.0001913732,0.0001841155,0.00006073495,0.00008397455],"domain_scores_gemma":[0.9995016,0.0001677246,0.0001776087,0.00004853103,0.00008364586,0.0000208651],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00009159933,0.00002539055,0.1629835,0.00002056019,0.000006679289,3.762158e-8,0.0001115733,8.74244e-7,0.8361843,0.0001055171,0.0001151725,0.0003548059],"study_design_scores_gemma":[0.0001506904,0.00005916152,0.5517138,0.00001080188,0.000002660459,6.833429e-7,0.0003748303,0.00003995731,0.4469791,0.0002499168,0.0003763795,0.00004204564],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9990314,0.0001159482,0.00001131702,0.0004631981,0.00003960213,0.0001596805,0.000123906,0.0000106161,0.00004429962],"genre_scores_gemma":[0.9991148,0.0001620561,0.0001038269,0.00004339949,0.00002324147,0.000006067736,0.0004379084,6.951273e-7,0.0001079714],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3892052,"threshold_uncertainty_score":0.1351181,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0168688794393273,"score_gpt":0.2235028187566225,"score_spread":0.2066339393172952,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}