{"id":"W2980061474","doi":"10.1093/conphys/coz051","title":"Discovery and validation of candidate smoltification gene expression biomarkers across multiple species and ecotypes of Pacific salmonids","year":2019,"lang":"en","type":"article","venue":"Conservation Physiology","topic":"Aquaculture Nutrition and Growth","field":"Agricultural and Biological Sciences","cited_by":44,"is_retracted":false,"has_abstract":true,"ca_institutions":"Simon Fraser University; University of British Columbia; Fisheries and Oceans Canada","funders":"Natural Sciences and Engineering Research Council of Canada; Genome British Columbia; Pacific Salmon Commission","keywords":"Biology; Ecotype; Smoltification; Gene expression; Ecology; Evolutionary biology; Gene; Fish <Actinopterygii>; Computational biology; Fishery; Genetics; Salmonidae; Salmo","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002495036,0.0002481269,0.0003361214,0.0005832796,0.0003094716,0.0003324201,0.0001262182,0.0001975667,0.0006911811],"category_scores_gemma":[0.0002332997,0.0001290806,0.0003030595,0.0005752046,0.0001980305,0.0001398881,0.0003336529,0.0002220699,0.0001595444],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000212389,"about_ca_system_score_gemma":0.0003233579,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003973257,"about_ca_topic_score_gemma":0.007810351,"domain_scores_codex":[0.9998199,0.00001316346,0.00001298489,0.00008030253,0.00004383245,0.00002979715],"domain_scores_gemma":[0.9998078,0.00003499488,0.00005163893,0.0000113702,0.00007118912,0.00002311662],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002890353,0.00004141999,0.167773,0.000124947,0.00007709426,0.0000502636,0.0002307511,0.0001757343,0.8234302,0.00004407331,0.0001287754,0.007634685],"study_design_scores_gemma":[0.000005711637,0.0002204567,0.9724654,0.00001221143,0.00007233705,0.00007100337,0.000320799,0.0005226464,0.02539583,0.00002960499,0.0008760897,0.000007980958],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9971827,0.0002459521,0.0007491612,0.00002162215,0.000005615459,0.00002080826,0.001423025,0.00001261116,0.0003385844],"genre_scores_gemma":[0.9906158,0.0002742156,0.002520415,0.00008988367,0.000007662066,0.0001151765,0.005077186,0.00001532256,0.001284388],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003973257,"threshold_uncertainty_score":0.007900238,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0168688794393273,"score_gpt":0.2235028187566225,"score_spread":0.2066339393172952,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}