{"id":"W2980260859","doi":"10.1101/804773","title":"Estimating relative CWD susceptibility and disease progression in farmed whitetail deer with rare PRNP alleles","year":2019,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Prion Diseases and Protein Misfolding","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Food Inspection Agency","funders":"Canadian Food Inspection Agency; U.S. Department of Agriculture","keywords":"Chronic wasting disease; PRNP; Biology; Genotype; Allele; Disease; Veterinary medicine; Genetics; Gene; Prion protein; Scrapie; Medicine; Internal medicine","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006486581,0.0002279755,0.0001673041,0.0009950526,0.0002985419,0.0004710529,0.0002760034,0.0003100776,0.0004782423],"category_scores_gemma":[0.001074555,0.0001520056,0.0001769244,0.0005402803,0.0002106449,0.000294886,0.0002044679,0.000190962,0.0001579779],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002607246,"about_ca_system_score_gemma":0.0001488947,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.009887111,"about_ca_topic_score_gemma":0.02559986,"domain_scores_codex":[0.9997286,0.00007696351,0.00002772891,0.00007460563,0.00005227515,0.00003973908],"domain_scores_gemma":[0.9991241,0.00020572,0.000336244,0.00005701013,0.0001483203,0.0001286337],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00007887741,0.00002281798,0.9955742,0.000005274961,0.0000174886,0.00004456289,0.00006547528,0.0000563319,0.00319949,0.000005614384,0.00001275372,0.0009170657],"study_design_scores_gemma":[0.000001794233,0.0001254462,0.9986204,0.000003417543,0.0000106413,0.0001970735,0.0002070901,0.0003316275,0.0004305281,0.00001042277,0.00005919699,0.000002347661],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9997171,0.0000278338,0.00009282977,0.000002028434,5.201331e-7,0.000003731145,0.00006701445,0.000001521724,0.00008748138],"genre_scores_gemma":[0.9990907,0.00003602802,0.0005241554,0.00000662127,0.000001320976,0.000005299047,0.0001976562,0.000001062639,0.00013708],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.009887111,"threshold_uncertainty_score":0.0196591,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008863372282866683,"score_gpt":0.2364135766542089,"score_spread":0.2275502043713422,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}