{"id":"W2980547146","doi":"10.1128/mra.00974-19","title":"Draft Genome Sequences of 43 Enterococcus faecalis and Enterococcus faecium Isolates from a Commercial Beef Processing Plant and Retail Ground Beef","year":2019,"lang":"en","type":"article","venue":"Microbiology Resource Announcements","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada; Beef Cattle Research Council","keywords":"Enterococcus faecium; Enterococcus faecalis; Beef cattle; Enterococcus; Biology; Meat packing industry; Food science; Microbiology; Food microbiology; Biotechnology; Bacteria; Escherichia coli; Antibiotics; Gene; Animal science; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001256953,0.001771188,0.001926372,0.003689022,0.001236142,0.002111211,0.001223691,0.001592873,0.004755047],"category_scores_gemma":[0.003970778,0.001130676,0.001903842,0.005107103,0.000482919,0.0009435994,0.001383092,0.002222201,0.00338418],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000933268,"about_ca_system_score_gemma":0.003060268,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0114074,"about_ca_topic_score_gemma":0.01299631,"domain_scores_codex":[0.9989296,0.0001304721,0.0001625226,0.000270574,0.0003279774,0.0001788288],"domain_scores_gemma":[0.9972288,0.000670592,0.0006884185,0.0001639771,0.0008959211,0.0003523301],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.005017123,0.0006523373,0.02215119,0.009442604,0.0007696921,0.00488583,0.003618641,0.004947613,0.8213781,0.001475537,0.03561759,0.09004376],"study_design_scores_gemma":[0.001054922,0.002571596,0.3298004,0.002701913,0.003791924,0.007212062,0.006207529,0.01121989,0.1477427,0.003616389,0.4833637,0.0007170471],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"dataset","genre_gemma":"empirical","genre_scores_codex":[0.370282,0.01331752,0.03202936,0.002400956,0.001127872,0.000843983,0.5691766,0.002549221,0.008272426],"genre_scores_gemma":[0.08894539,0.004274698,0.0594994,0.0004222695,0.0001472355,0.0005606347,0.8413233,0.0007546388,0.004072561],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.0114074,"threshold_uncertainty_score":0.02268201,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01922266126466323,"score_gpt":0.2548102268623335,"score_spread":0.2355875655976703,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}