{"id":"W2980673786","doi":"10.1099/ijsem.0.003772","title":"Description and complete genome sequences of Bradyrhizobium symbiodeficiens sp. nov., a non-symbiotic bacterium associated with legumes native to Canada","year":2019,"lang":"en","type":"article","venue":"INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":16,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada","keywords":"Biology; Bradyrhizobium; Housekeeping gene; rpoB; Genome; Phylogenetic tree; Lineage (genetic); Botany; Whole genome sequencing; Genetics; Phylogenetics; Gene; 16S ribosomal RNA; Rhizobium","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000319939,0.0001483911,0.0004712633,0.00006267653,0.00005808984,0.0000304037,0.0002757758,0.00007451891,0.0000506924],"category_scores_gemma":[0.00008276923,0.00006576689,0.00005441098,0.0001302539,0.0001044326,0.0001245545,0.00007163749,0.0001011429,0.000004121604],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002183228,"about_ca_system_score_gemma":0.00009611431,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.006222467,"about_ca_topic_score_gemma":0.008498411,"domain_scores_codex":[0.9987049,0.0001446309,0.0005834469,0.0001822823,0.0002080333,0.0001767216],"domain_scores_gemma":[0.9982809,0.0003123413,0.0006266357,0.00003921385,0.000664241,0.00007666223],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00007274888,0.00004822101,0.01539345,0.0002207514,0.0002304076,0.00001123723,0.0002202753,0.000004368236,0.9836859,0.00005574482,0.0000504556,0.000006466632],"study_design_scores_gemma":[0.001819653,0.003501429,0.9550179,0.009837754,0.0003073815,0.006393405,0.006046883,0.0001509804,0.01571681,0.0002211565,0.0001392871,0.0008473453],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9976912,0.0004696539,0.00001147473,0.0008477879,0.0003529711,0.0002911694,0.0002976872,0.000004886464,0.00003323461],"genre_scores_gemma":[0.9994603,0.000006430884,0.000175517,0.0001704254,0.00005516428,0.000003327049,0.00004533489,0.0000017021,0.00008176978],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9679691,"threshold_uncertainty_score":0.9406551,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01098291504270896,"score_gpt":0.1841257912149427,"score_spread":0.1731428761722338,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}