{"id":"W2980673786","doi":"10.1099/ijsem.0.003772","title":"Description and complete genome sequences of Bradyrhizobium symbiodeficiens sp. nov., a non-symbiotic bacterium associated with legumes native to Canada","year":2019,"lang":"en","type":"article","venue":"INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":16,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada","keywords":"Biology; Bradyrhizobium; Housekeeping gene; rpoB; Genome; Phylogenetic tree; Lineage (genetic); Botany; Whole genome sequencing; Genetics; Phylogenetics; Gene; 16S ribosomal RNA; Rhizobium","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002439924,0.001060757,0.0008306258,0.002036306,0.0009255917,0.001014849,0.0008281186,0.0004663065,0.001926524],"category_scores_gemma":[0.0006383504,0.0003723202,0.0005822678,0.00397632,0.0003029006,0.0003520791,0.0004051045,0.0009842541,0.00207137],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002308608,"about_ca_system_score_gemma":0.006131371,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.2406716,"about_ca_topic_score_gemma":0.2832494,"domain_scores_codex":[0.9997278,0.000008824807,0.00002534476,0.00006706901,0.000113009,0.0000579524],"domain_scores_gemma":[0.9992629,0.00005324513,0.0001311204,0.00004548108,0.0003410181,0.000166153],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001289149,0.0001935759,0.01721141,0.003174224,0.0001427897,0.001382062,0.001288474,0.001292376,0.9002513,0.0005796665,0.006553962,0.06664096],"study_design_scores_gemma":[0.00023119,0.000534481,0.5886881,0.0007561293,0.0007725162,0.003046356,0.00134521,0.002485137,0.0691835,0.00057069,0.3321912,0.000195513],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.4899301,0.01770504,0.01149616,0.0007026774,0.0002525008,0.0008032285,0.4677891,0.0009580598,0.01036316],"genre_scores_gemma":[0.2068536,0.007021208,0.02742136,0.0002814462,0.00005486624,0.0004110003,0.7510313,0.0002487395,0.006676323],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7593284,"threshold_uncertainty_score":0.4785414,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01098291504270896,"score_gpt":0.1841257912149427,"score_spread":0.1731428761722338,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}