{"id":"W2980932565","doi":"10.1016/j.jtbi.2019.110053","title":"A study of nitric oxide dynamics in a growing biofilm using a density dependent reaction-diffusion model","year":2019,"lang":"en","type":"article","venue":"Journal of Theoretical Biology","topic":"Hemoglobin structure and function","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Waterloo","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biofilm; Diffusion; Biological system; Reaction–diffusion system; Chemical physics; Nitric oxide; Virulence; Dynamics (music); Chemistry; Microbiology; Bacteria; Biology; Biophysics; Physics; Biochemistry; Thermodynamics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008588642,0.001056784,0.001804093,0.0007555172,0.001179233,0.00152879,0.002454189,0.003205656,0.00156194],"category_scores_gemma":[0.002991894,0.0008210682,0.001464067,0.0004759065,0.001720027,0.001747032,0.001188634,0.001591599,0.000172901],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001526134,"about_ca_system_score_gemma":0.001386035,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01878838,"about_ca_topic_score_gemma":0.00561615,"domain_scores_codex":[0.9997382,0.00009667778,0.00001009125,0.000058014,0.00004242068,0.00005460565],"domain_scores_gemma":[0.9978523,0.001535681,0.0001825446,0.00005593046,0.0001695637,0.0002039423],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"simulation_or_modeling","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.0001589234,0.000212529,0.001300202,0.0001423887,0.00009525347,0.0004975679,0.0001284552,0.9303629,0.01571444,0.04952641,0.0003697299,0.001491198],"study_design_scores_gemma":[0.0000163465,0.00001736048,0.000118345,0.000002479424,0.000008268752,0.00001057205,0.00000828107,0.9985589,0.0002167357,0.0009817528,0.00005196556,0.000008978444],"study_design_candidate":"simulation_or_modeling","study_design_consensus":"simulation_or_modeling","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8465241,0.002221452,0.132425,0.002964501,0.0002608775,0.0001204176,0.0002354204,0.0001630492,0.01508528],"genre_scores_gemma":[0.9824272,0.0008150702,0.00957552,0.0001835685,0.00009881315,0.0000754032,0.00008653714,0.00005442298,0.006683397],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01878838,"threshold_uncertainty_score":0.03735805,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008510996183854123,"score_gpt":0.2596641025313157,"score_spread":0.2511531063474616,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}