{"id":"W2980963357","doi":"10.1099/ijsem.0.003775","title":"A phylogenomic and comparative genomic framework for resolving the polyphyly of the genus Bacillus: Proposal for six new genera of Bacillus species, Peribacillus gen. nov., Cytobacillus gen. nov., Mesobacillus gen. nov., Neobacillus gen. nov., Metabacillus gen. nov. and Alkalihalobacillus gen. nov.","year":2019,"lang":"en","type":"article","venue":"INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY","topic":"Bacillus and Francisella bacterial research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":303,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Polyphyly; Genus; Taxonomy (biology); Evolutionary biology; Zoology; Phylogenetics; Genetics; Gene; Clade","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001168102,0.0004454931,0.0005031756,0.003471045,0.001028039,0.001193844,0.0007122784,0.0006707726,0.001172863],"category_scores_gemma":[0.001353231,0.0003255255,0.0006417453,0.00209929,0.0008909689,0.00125602,0.000971827,0.00152224,0.0004200469],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008962167,"about_ca_system_score_gemma":0.0009398924,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001799348,"about_ca_topic_score_gemma":0.002749908,"domain_scores_codex":[0.9996074,0.0001581369,0.00002764122,0.000108449,0.00005701938,0.00004127574],"domain_scores_gemma":[0.9995286,0.0001384245,0.0001028161,0.00006756965,0.00008206487,0.00008045764],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001271078,0.0003850875,0.03141926,0.002032963,0.0006035875,0.001520806,0.002817407,0.01400172,0.7074855,0.04704161,0.002364744,0.1890563],"study_design_scores_gemma":[0.0003110109,0.002200013,0.4657482,0.00175359,0.001937994,0.006269581,0.00756056,0.1402958,0.05844404,0.1952418,0.1197378,0.0004995848],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.6522496,0.01833645,0.3078039,0.003049505,0.0002310972,0.0004631113,0.004440934,0.0008023629,0.01262297],"genre_scores_gemma":[0.7275884,0.005059517,0.2580613,0.0008596042,0.0001126308,0.0003727958,0.006826653,0.0001267782,0.0009922808],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003471045,"threshold_uncertainty_score":0.006502509,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02717076120021597,"score_gpt":0.263950560448846,"score_spread":0.23677979924863,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}