{"id":"W2981101604","doi":"10.1186/s12864-019-6146-7","title":"DNA methylomes and transcriptomes analysis reveal implication of host DNA methylation machinery in BmNPV proliferation in Bombyx mori","year":2019,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":31,"is_retracted":false,"has_abstract":true,"ca_institutions":"Ministry of Agriculture","funders":"Government of Jiangsu Province; Jiangsu University; Six Talent Peaks Project in Jiangsu Province; National Natural Science Foundation of China","keywords":"Biology; DNA methylation; Differentially methylated regions; Methylated DNA immunoprecipitation; Transcriptome; Methylation; Epigenetics; Molecular biology; DNA methyltransferase; Gene; Epigenomics; Genetics; Gene expression","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002833586,0.00008941512,0.0002150251,0.00007471922,0.00002993999,0.00002255408,0.00008289427,0.00007796883,0.00004440005],"category_scores_gemma":[0.00002080295,0.00004561864,0.00006634888,0.0006730126,0.00001507436,0.00008819636,0.00001976574,0.00005361774,0.000003600255],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003742461,"about_ca_system_score_gemma":0.00001462732,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004033974,"about_ca_topic_score_gemma":0.007370501,"domain_scores_codex":[0.9991478,0.00008645869,0.0003224876,0.0002331481,0.00009187854,0.0001181982],"domain_scores_gemma":[0.9996662,0.0001044446,0.0001038037,0.00006209367,0.00003309767,0.00003034526],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00001465892,0.00003223244,0.3808772,0.000008147063,0.00001197133,4.652128e-8,0.0002668143,0.0003466028,0.6155065,0.0001951988,8.22433e-7,0.002739838],"study_design_scores_gemma":[0.000203397,0.00005898711,0.9713818,0.000004005679,0.00003961505,5.206957e-7,0.0001592554,0.0026168,0.02448376,0.0008485566,0.0001098058,0.00009342916],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9988502,0.0002012101,0.00004139089,0.0003697623,0.00003232936,0.0003465401,0.00004688074,0.000008323886,0.0001033862],"genre_scores_gemma":[0.9989738,0.00006565236,0.0006677303,0.00002342554,0.00003735994,0.00001882967,0.0001457941,9.003024e-7,0.00006649417],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5910227,"threshold_uncertainty_score":0.4112913,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01615555868218676,"score_gpt":0.2334721147206879,"score_spread":0.2173165560385011,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}