{"id":"W2981453558","doi":"10.1016/j.jtbi.2020.110242","title":"Pattern formation in a coupled membrane-bulk reaction-diffusion model for intracellular polarization and oscillations","year":2020,"lang":"en","type":"article","venue":"Journal of Theoretical Biology","topic":"Nonlinear Dynamics and Pattern Formation","field":"Computer Science","cited_by":26,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; National Science Foundation","keywords":"Reaction–diffusion system; Intracellular; Polarization (electrochemistry); Membrane; Diffusion; Biophysics; Chemical physics; Biological system; Chemistry; Materials science; Statistical physics; Physics; Mechanics; Thermodynamics; Biology; Physical chemistry; Biochemistry","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003223118,0.00006334264,0.00013702,0.00009599668,0.00004358935,0.00003496439,0.000147407,0.00008271699,0.000003823282],"category_scores_gemma":[0.0001311288,0.00005027994,0.00004006359,0.0001037013,0.00004351656,0.000333216,0.00004548132,0.0001239852,0.000001314911],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002291373,"about_ca_system_score_gemma":0.00001996383,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000001863625,"about_ca_topic_score_gemma":0.000002804643,"domain_scores_codex":[0.9993114,0.00005462063,0.0003712301,0.00008838277,0.00007351339,0.0001008157],"domain_scores_gemma":[0.9994478,0.0001082312,0.0002060002,0.00006392184,0.000107082,0.00006697735],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.0001282585,0.00007206705,0.001995417,0.00006385204,0.00001561024,0.000003048739,0.002845774,0.00255329,0.2640572,0.7100814,0.00001149067,0.01817264],"study_design_scores_gemma":[0.0004973974,0.0001642916,0.0002174386,0.0000121816,0.000006040452,0.00002873008,0.00001140355,0.9320306,0.0007137827,0.06623375,0.00003248766,0.0000518702],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.3454298,0.00001393301,0.6497996,0.004601514,0.00005657209,0.00007864906,0.000004373774,0.000005153302,0.00001043743],"genre_scores_gemma":[0.9868736,0.00003243984,0.01250961,0.000500315,0.00005935708,0.000001514438,0.0000181233,0.000003591696,0.000001422556],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.9294773,"threshold_uncertainty_score":0.2050356,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01465404423494501,"score_gpt":0.2456894788403989,"score_spread":0.2310354346054539,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}