{"id":"W2981573822","doi":"10.4315/0362-028x.jfp-19-028","title":"Potential Ad Hoc Markers of Persistence and Virulence in Canadian Listeria monocytogenes Food and Clinical Isolates","year":2019,"lang":"en","type":"article","venue":"Journal of Food Protection","topic":"Listeria monocytogenes in Food Safety","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University; Public Health Ontario; BC Centre for Disease Control; Canadian Food Inspection Agency","funders":"","keywords":"Virulence; Listeria monocytogenes; Biology; Microbiology; Genome; Biofilm; Gene; Phenotype; Listeria; In silico; Bacteria; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005498921,0.0004631436,0.0006498601,0.003790833,0.001149908,0.001235676,0.0007143095,0.0004983981,0.001495329],"category_scores_gemma":[0.00342464,0.0002671283,0.0004900325,0.005777644,0.0005333895,0.0002511133,0.0006671307,0.0004160971,0.0002273209],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.004813732,"about_ca_system_score_gemma":0.005481673,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.7367721,"about_ca_topic_score_gemma":0.7980963,"domain_scores_codex":[0.9988719,0.00006598613,0.00008692047,0.0002691509,0.0004741645,0.0002318609],"domain_scores_gemma":[0.998036,0.0002993669,0.0005418524,0.00008242771,0.0007959415,0.0002445228],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00101208,0.00007706184,0.9424741,0.0003772975,0.0001866593,0.0005485998,0.001107275,0.001007518,0.03649848,0.0001540779,0.001067004,0.01548985],"study_design_scores_gemma":[0.00001933535,0.000100904,0.9901545,0.00003864184,0.0001284704,0.0006035707,0.0009005107,0.001320212,0.00321598,0.00006661429,0.003427174,0.00002409607],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.98948,0.001054449,0.0003321123,0.0001128738,0.00000640415,0.00003008361,0.007870696,0.00002934463,0.001083996],"genre_scores_gemma":[0.9854016,0.0005326283,0.001547589,0.0000849218,0.000007394755,0.00002319825,0.01183943,0.00001512598,0.0005481667],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2632279,"threshold_uncertainty_score":0.5295562,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04719025561751579,"score_gpt":0.2943657489441834,"score_spread":0.2471754933266677,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}