{"id":"W2981907659","doi":"10.3389/fmicb.2019.02463","title":"Taxogenomics and Systematics of the Genus Pantoea","year":2019,"lang":"en","type":"article","venue":"Frontiers in Microbiology","topic":"Plant Diversity and Evolution","field":"Agricultural and Biological Sciences","cited_by":50,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada","keywords":"Systematics; Biology; Evolutionary biology; Pantoea; Genus; Zoology; Computational biology; Bacteria; Taxonomy (biology); Paleontology; 16S ribosomal RNA","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002933038,0.0003916748,0.0004863386,0.002471044,0.0004643215,0.0007558978,0.0002168875,0.00047436,0.0006210959],"category_scores_gemma":[0.001164347,0.0002151795,0.0002232835,0.004110293,0.0003613612,0.0007627557,0.0005968821,0.0003705228,0.0002326218],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004210813,"about_ca_system_score_gemma":0.0008154678,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00462735,"about_ca_topic_score_gemma":0.003826724,"domain_scores_codex":[0.9994594,0.00009353802,0.00005538563,0.0001801829,0.0001183741,0.00009300627],"domain_scores_gemma":[0.9994498,0.00009654956,0.000174662,0.0000445424,0.0001674759,0.00006688852],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0006892084,0.0001258695,0.3303801,0.001799926,0.0001184331,0.0009604733,0.00290917,0.001212563,0.526584,0.001230772,0.0005815529,0.1334079],"study_design_scores_gemma":[0.00001039421,0.0003255291,0.9573185,0.0001861555,0.00009646133,0.001537833,0.001965749,0.00196781,0.01148125,0.0007722365,0.02430664,0.00003141332],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.984396,0.009339795,0.002239994,0.0004330639,0.00002659789,0.00004784896,0.001699499,0.00005470028,0.001762465],"genre_scores_gemma":[0.9800029,0.0101701,0.004851684,0.0001470903,0.00004075041,0.00004932737,0.003566515,0.0000359231,0.001135673],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00462735,"threshold_uncertainty_score":0.009200811,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006767691762169829,"score_gpt":0.1431330858681937,"score_spread":0.1363653941060239,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}