{"id":"W2982047338","doi":"10.1093/gbe/evz234","title":"Comparative Genomics Analysis Reveals High Levels of Differential Retrotransposition among Primates from the Hominidae and the Cercopithecidae Families","year":2019,"lang":"en","type":"article","venue":"Genome Biology and Evolution","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":16,"is_retracted":false,"has_abstract":true,"ca_institutions":"Brock University","funders":"Ontario Ministry of Research and Innovation; Natural Sciences and Engineering Research Council of Canada; Brock University; Compute Canada","keywords":"Retrotransposon; Biology; Genome; Comparative genomics; Hominidae; Genome evolution; Evolutionary biology; Transposition (logic); Genomics; Macaque; Genetics; Primate; Human genome; Gene; Transposable element; Biological evolution","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001462794,0.0001782863,0.000275281,0.0008755424,0.0002995441,0.0003685169,0.0001208909,0.0002172859,0.001092126],"category_scores_gemma":[0.0003709288,0.00009750226,0.000272314,0.0008715259,0.0001998888,0.0001562908,0.0003214298,0.000259357,0.0002344358],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001246858,"about_ca_system_score_gemma":0.0001347646,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009380257,"about_ca_topic_score_gemma":0.001392966,"domain_scores_codex":[0.9998466,0.00001767136,0.000007873849,0.00007048994,0.00003091637,0.0000265423],"domain_scores_gemma":[0.9997653,0.00006558071,0.0000654897,0.00001911801,0.00003189711,0.00005259782],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004334601,0.00003384266,0.08250341,0.0001807587,0.0001855666,0.0004061815,0.001173507,0.0002674688,0.8942116,0.0003487944,0.0001302334,0.02012513],"study_design_scores_gemma":[0.000009077198,0.000168421,0.9794901,0.00001508493,0.00008731343,0.001048021,0.0004902883,0.001014476,0.01452488,0.0002429313,0.002896438,0.00001300835],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9979864,0.00054009,0.0004075344,0.000017652,0.000001326202,0.00000303224,0.0003840422,0.00001760771,0.000642241],"genre_scores_gemma":[0.9970152,0.0002370404,0.001104594,0.00003402356,0.000005131373,0.000008104557,0.001291016,0.00001221309,0.0002926765],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001092126,"threshold_uncertainty_score":0.003653586,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01133943627043874,"score_gpt":0.2059290654408906,"score_spread":0.1945896291704518,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}