{"id":"W2982158891","doi":"10.4315/0362-028x.jfp-19-205","title":"Genome Analysis and Multiplex PCR Method for the Molecular Detection of Coresistance to Cephalosporins and Fosfomycin in Salmonella enterica Serovar Heidelberg","year":2019,"lang":"en","type":"article","venue":"Journal of Food Protection","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":21,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Food Inspection Agency; Agriculture and Agri-Food Canada","funders":"","keywords":"Biology; Salmonella; Salmonella enterica; Resistome; Microbiology; Fosfomycin; Cephalosporin; Genome; Antibiotic resistance; Serotype; Multilocus sequence typing; Gene; Genetics; Virology; Antimicrobial; Antibiotics; Integron; Genotype; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008318808,0.00008992568,0.0003067998,0.00006460721,0.00004788048,0.00001408726,0.00008709679,0.00007208456,0.000006840459],"category_scores_gemma":[0.0001016297,0.00003626313,0.0001223311,0.0004836601,0.0000176218,0.00006191528,0.00002462643,0.0001098533,3.033384e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002639699,"about_ca_system_score_gemma":0.000003721997,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003591802,"about_ca_topic_score_gemma":0.001009344,"domain_scores_codex":[0.9990737,0.0001668413,0.0003704716,0.0001653706,0.0000971499,0.0001264227],"domain_scores_gemma":[0.9991888,0.0002683613,0.0003413543,0.00004637021,0.0001048273,0.00005030258],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0004212025,0.00002182139,0.01002759,0.00001292075,0.0001242123,5.725792e-7,0.00007707809,0.0003344976,0.9436375,0.00001000925,3.988707e-7,0.04533223],"study_design_scores_gemma":[0.0003146672,0.00201238,0.9393091,0.00001551667,0.0001185731,0.00003245806,0.0002325656,0.001170339,0.05552083,0.0004850476,0.0007032104,0.00008532816],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9705758,0.0006697519,0.02769732,0.0004892721,0.00006653732,0.0004857462,0.00000697433,0.000003505321,0.000005061015],"genre_scores_gemma":[0.99807,0.0001056891,0.001682083,0.00005729081,0.00005473563,0.00001825557,8.576974e-7,0.000001100183,0.000009968296],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9292815,"threshold_uncertainty_score":0.1478768,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0198551394942409,"score_gpt":0.2477303134964886,"score_spread":0.2278751740022477,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}