{"id":"W2982197889","doi":"10.1093/ofid/ofz360.318","title":"243. Transflection Fourier Transform Infrared Spectroscopy as a Real-Time Strain Typing Technique: A Vancomycin-Resistant Enterococcus faecium (VRE) Typing Prospective Study","year":2019,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Spectroscopy Techniques in Biomedical and Chemical Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University Health Centre; McGill University","funders":"","keywords":"Typing; Pulsed-field gel electrophoresis; Enterococcus faecium; Outbreak; Fourier transform infrared spectroscopy; Microbiology; Medicine; Biology; Virology; Antibiotics; Genotype; Optics; Physics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0003444675,0.0004478718,0.000488395,0.0001632303,0.0003063798,0.0002489442,0.0007220724,0.0002755335,0.0009158814],"category_scores_gemma":[0.0001329017,0.0004087187,0.0002574633,0.0004731327,0.0001669078,0.00005529688,0.000337562,0.0003710734,0.00008764141],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003080024,"about_ca_system_score_gemma":0.0003226033,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002985608,"about_ca_topic_score_gemma":0.0001158476,"domain_scores_codex":[0.9971597,0.0001496224,0.0004796762,0.0009957786,0.0003955168,0.0008196642],"domain_scores_gemma":[0.9986168,0.00004346609,0.0001280439,0.0007011853,0.0001656806,0.0003448889],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.002181664,0.001752676,0.02330637,0.00007627749,0.000270454,0.00001520347,0.00009791607,0.000001872963,0.9661519,0.0002522821,0.004523776,0.001369626],"study_design_scores_gemma":[0.0070064,0.01567101,0.007655716,0.0003385821,0.0002218873,0.00006311217,0.0007436358,0.00009152035,0.9068967,0.02154825,0.0382354,0.001527757],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7400789,0.0002134425,0.005029039,0.0003144722,0.0002641593,0.01034987,0.0003452399,0.0004101243,0.2429947],"genre_scores_gemma":[0.9913002,0.0001905445,0.0007145965,0.0002653353,0.0001401211,0.001760421,0.0002550505,0.00009549011,0.005278217],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2512213,"threshold_uncertainty_score":0.9999974,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006290513888172977,"score_gpt":0.3083599956729208,"score_spread":0.3020694817847478,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}