{"id":"W2982290461","doi":"10.1128/aem.01903-19","title":"Horizontal Gene Transfer and Acquired Antibiotic Resistance in Salmonella enterica Serovar Heidelberg following<i>In Vitro</i>Incubation in Broiler Ceca","year":2019,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":58,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Agricultural Research Service; National Science Foundation","keywords":"Salmonella enterica; Broiler; Serotype; Microbiology; Salmonella; Incubation; Biology; Gene transfer; Antibiotics; Antibiotic resistance; In vitro; Horizontal gene transfer; Enterobacteriaceae; Gene; Bacteria; Escherichia coli; Food science; Genetics","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002053025,0.0002166742,0.0004190477,0.00003321132,0.00003622273,0.00001028575,0.0001110684,0.0002306471,0.00005359959],"category_scores_gemma":[0.000002236918,0.0001213594,0.00004838267,0.0001155446,0.0001144547,0.0000563837,0.00007474201,0.0001184424,0.00002580991],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006528651,"about_ca_system_score_gemma":0.000002195665,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001753062,"about_ca_topic_score_gemma":0.0007125288,"domain_scores_codex":[0.9984965,0.0001163358,0.0003554134,0.0005882182,0.00003484324,0.0004087379],"domain_scores_gemma":[0.9997202,0.0001207702,0.00004100686,0.00006453713,8.562094e-7,0.00005270011],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001864435,0.00007877299,0.1816185,0.000005666374,0.000006266024,0.000008241444,0.0001095444,0.000001750159,0.8162417,0.00002507549,0.000005821008,0.001712288],"study_design_scores_gemma":[0.001397871,0.0001774616,0.9439462,0.00001992881,0.000007995424,0.00002808758,0.000454039,0.00001433834,0.05233352,0.000310418,0.0009603642,0.0003497349],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9982024,0.0008503721,0.000001537706,0.0001976836,0.00008286695,0.0003486457,0.00004847051,0.00001095187,0.0002570364],"genre_scores_gemma":[0.9986711,0.0004564552,0.00008961229,0.0003487037,0.00002698205,0.00001275794,0.0003415998,0.000003100794,0.00004972929],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7639081,"threshold_uncertainty_score":0.4948894,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.004401522752022178,"score_gpt":0.1619892149248081,"score_spread":0.1575876921727859,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}