{"id":"W2982339952","doi":"10.1139/cjm-2019-0330","title":"Bacterial microbiome associated with the rhizosphere and root interior of crops in Saskatchewan, Canada","year":2019,"lang":"en","type":"article","venue":"Canadian Journal of Microbiology","topic":"Plant-Microbe Interactions and Immunity","field":"Agricultural and Biological Sciences","cited_by":104,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Saskatchewan","funders":"","keywords":"Rhizosphere; Gemmatimonadetes; Biology; Acidobacteria; Actinobacteria; Firmicutes; Microbiome; Proteobacteria; Bulk soil; Edaphic; Botany; Bacteroidetes; Agronomy; Bacteria; Ecology; Soil water","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":true,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000209265,0.0003752513,0.0002709902,0.0009917562,0.002080019,0.0009483913,0.0004242397,0.0002545415,0.001363733],"category_scores_gemma":[0.0003115245,0.0002504978,0.0001896574,0.002466721,0.000550042,0.0002428489,0.0005579452,0.0003225558,0.0002760779],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.01388654,"about_ca_system_score_gemma":0.02301426,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.983467,"about_ca_topic_score_gemma":0.9960991,"domain_scores_codex":[0.9997526,0.0000146308,0.000009666677,0.0000776502,0.0000641813,0.00008124334],"domain_scores_gemma":[0.9994455,0.00003395305,0.00006229344,0.00001609665,0.0003187184,0.000123439],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0004431417,0.0001034605,0.857686,0.0002376803,0.0001348753,0.001005039,0.003510691,0.0007073446,0.1010864,0.0003669407,0.00244579,0.0322727],"study_design_scores_gemma":[0.00001011065,0.00003544351,0.9927666,0.00003292272,0.00002428085,0.00008563194,0.003073254,0.0004131219,0.001392804,0.00004222183,0.002104364,0.00001932798],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9922652,0.0004309467,0.0002878367,0.0001478489,0.000006834155,0.00006400065,0.003603706,0.00001506811,0.003178506],"genre_scores_gemma":[0.9912449,0.0007560528,0.001171647,0.0002259679,0.000002179365,0.00004380403,0.002727869,0.00001166566,0.003816075],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01653296,"threshold_uncertainty_score":0.1007543,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.005063710757107199,"score_gpt":0.1608671768302668,"score_spread":0.1558034660731596,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}