{"id":"W2982339952","doi":"10.1139/cjm-2019-0330","title":"Bacterial microbiome associated with the rhizosphere and root interior of crops in Saskatchewan, Canada","year":2019,"lang":"en","type":"article","venue":"Canadian Journal of Microbiology","topic":"Plant-Microbe Interactions and Immunity","field":"Agricultural and Biological Sciences","cited_by":104,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Saskatchewan","funders":"","keywords":"Rhizosphere; Gemmatimonadetes; Biology; Acidobacteria; Actinobacteria; Firmicutes; Microbiome; Proteobacteria; Bulk soil; Edaphic; Botany; Bacteroidetes; Agronomy; Bacteria; Ecology; Soil water","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":true,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001937415,0.00009683635,0.0002465479,0.00002345592,0.00006447927,0.00002330595,0.0002462363,0.00008148223,0.0006919105],"category_scores_gemma":[0.00002709136,0.00003475301,0.0000357469,0.0001426106,0.0001159357,0.00005503847,0.00001860469,0.0002357113,0.000001738779],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001353267,"about_ca_system_score_gemma":0.0005605636,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.7730321,"about_ca_topic_score_gemma":0.9995797,"domain_scores_codex":[0.9992762,0.0001267535,0.0002626719,0.00008723712,0.0000209032,0.0002261994],"domain_scores_gemma":[0.9993403,0.0001603646,0.0002520836,0.00004012274,0.0001150292,0.00009208306],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00005310776,0.000007400114,0.03222989,0.000002303391,0.00003559863,0.00001853962,0.0001426702,0.000001330401,0.9634904,0.000001157386,0.002957344,0.001060282],"study_design_scores_gemma":[0.001008076,0.001064568,0.795357,0.0003413533,0.00003273692,0.001741274,0.007762113,0.000001377881,0.04634812,0.000007565621,0.1460225,0.0003133773],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9980302,0.0002032079,1.126076e-7,0.000999972,0.0003047863,0.00007818024,0.0003274879,9.120761e-7,0.00005507539],"genre_scores_gemma":[0.9994541,0.000003313974,0.000006824754,0.0001716992,0.0000296359,3.942155e-7,0.00003904421,9.943899e-7,0.0002940096],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9171423,"threshold_uncertainty_score":0.7575935,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.005063710757107199,"score_gpt":0.1608671768302668,"score_spread":0.1558034660731596,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}